Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1570 ATGGCGTCTATGAACTGGTTGGGTTTCTCTCTGTACCCTCAAGAACTTCCACATGAGGAACACTCTCAAACAGTGCCCACTACTGCTAGCCTCGGCTTCAACTCTGATGAAGGAATCTCAGCCACTGGCGAGTGCTTTGATCTCACATCACACTCCTCCACTGCTCCTCATCATTCACTCAACCACCTCCCTCCTCCTTTTCCCATATTTGATGCACTCAGCAGAAATATTTCTCAAGATTGGAACACAAAGGGTAACTACAACAACCAAAGCTTTCTATTGGGAACTTCATGCAGCAACAACCAGCAACAACAACAGCCAAAGCTTGAAAACTTTCTGGGCCAACACTCTTTTGGTGATAATAGCCATCAAGACCACCCAACATACGGTGGCAACTCAGCCTCCTCAGGAGGAGGCCTTATGTTCCCAAGCTGTTCACTACAACTTCCGGCAGCATCTCAGCTGCCGGAAGAAGAATCAGCAGCTTGTGGCGGCAGCAACGGAGGTAGCGGTAGTCCTAAAAACACCAACTCCATAGGGTTATCCATGATAAAATCATGGCTGAGGAACCAACCACCACAGAAACAGCCATCATCATCATCAGATGCTGCAGCGGCAGCAAATATATCTCTTTCTATGAGTACTGTTTCGCAATCAACATCGTCAATGGCACTGCCTCTCCTCAGAGGCAGTGTGGATGGAGAGAGTTCCTCTTCAGATAATAACAAGAAGCAGCAGCAGCAACCAACTACCGCCGCACTTGAAGGCCAAGCAAGTGCTATTGTTGAGAGTGCAGTGCCAGCAGCCAGAAAGGCCATTGACACATTTGGACAGAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGGTGGACGGGTAGATATGAGGCTCACCTGTGGGACAATAGTTGTAGAAGAGAAGGGCAAACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAGAAGGCAGCTAGAGCGTATGATTTAGCAGCACTTAAGTACTGGGGAACAACTACCACAACAAATTTTCCAATTAGCAACTATGAAAAAGAGCTGGAAGAAATGAAGCACATGACAAGGCAAGAGTACATTGCGTCATTGAGAAGGAAAAGCAGTGGATTCTCTCGCGGTGCATCCATATATCGAGGGGTAACAAGGCATCATCAGCATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTGGGAACTTTCAGCACCCAAGAAGAGGCTGCAGAGGCATATGACATTGCAGCAATCAAATTCCGAGGACTGAATGCAGTCACAAACTTTGAGATGAGCAGATACGATGTTAAGAGCATTCTTGAGAGCAGCACTTTGCCTATTGGTGGAGTTGCTGGCAAACGTTTGAAGGAAAACAATGTTGAGCAGGTTGAACTCAGTGTAGACAATATTAGGCAGCAAAAATCATCATCAGAAGATCATAGCATGAACTCACACCTAAGCTATGGTGCAAATAATAACCAACAAGGTTGGCCTTCCCTTCAATTCCAGCAACAAACTCATCAGCCTTATAGCCAGATGCATGGTAATTACCACTATGGTCATCAGAAGCTTTGGTGCAAGCAAGAACAAGATGTTGTTGATGCCTCTCAAACCTTCCATGATATTCATATGCTACAATTAGGGAACACCCACAATTTCTTTCAGTCAAATTCTGGGGTGCACAGTTTCATGAGCATTGATTCTTCTTCCATTGACAACAATAGCTCTGGATCAATATATGGTGATGGTAATGGCTATGGAGCAAGTGGTGGGGGCTACATGATTCCAATTGGAAATGATGGTGGTAACCAAAACCAAAGAAGCAACAATGGTTTTGGTGATAATGACATAAAGTTGCTTGGATATGAAAATGTGATGAACTCTTCTGATCCTTATTATTATCATGCCAGGAACTTGTACTATCATTCGCAGCAAACATCTGAAGATCATCATGCAGTTAAGGGTAGTGAATTCGATGCTGCATGCAACACTACTTGGGTGCCAACTGCTATTCCAACTACTCTTGCTGCGCCAAGGCCTAATAACAACATGGCTCTTTGCACTGGAGCTCCACCTTTCACATTGTTGCATGAGTAG 2124 0.4501 MASMNWLGFSLYPQELPHEEHSQTVPTTASLGFNSDEGISATGECFDLTSHSSTAPHHSLNHLPPPFPIFDALSRNISQDWNTKGNYNNQSFLLGTSCSNNQQQQQPKLENFLGQHSFGDNSHQDHPTYGGNSASSGGGLMFPSCSLQLPAASQLPEEESAACGGSNGGSGSPKNTNSIGLSMIKSWLRNQPPQKQPSSSSDAAAAANISLSMSTVSQSTSSMALPLLRGSVDGESSSSDNNKKQQQQPTTAALEGQASAIVESAVPAARKAIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKELEEMKHMTRQEYIASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVKSILESSTLPIGGVAGKRLKENNVEQVELSVDNIRQQKSSSEDHSMNSHLSYGANNNQQGWPSLQFQQQTHQPYSQMHGNYHYGHQKLWCKQEQDVVDASQTFHDIHMLQLGNTHNFFQSNSGVHSFMSIDSSSIDNNSSGSIYGDGNGYGASGGGYMIPIGNDGGNQNQRSNNGFGDNDIKLLGYENVMNSSDPYYYHARNLYYHSQQTSEDHHAVKGSEFDAACNTTWVPTAIPTTLAAPRPNNNMALCTGAPPFTLLHE* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1570 707 PRINTS Ethylene responsive element binding protein signature 283 294 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 PRINTS Ethylene responsive element binding protein signature 421 441 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 ProSiteProfiles AP2/ERF domain profile. 282 345 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 SUPERFAMILY DNA-binding domain 281 347 IPR016177 GO:0003677
Dod06g1570 707 MobiDBLite consensus disorder prediction 165 179 - -
Dod06g1570 707 CDD AP2 380 441 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 625 - -
Dod06g1570 707 Coils Coil 462 482 - -
Dod06g1570 707 Pfam AP2 domain 282 337 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 Pfam AP2 domain 381 431 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 CDD AP2 281 347 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 ProSiteProfiles AP2/ERF domain profile. 381 439 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 PANTHER BNAC02G44180D PROTEIN 5 625 - -
Dod06g1570 707 MobiDBLite consensus disorder prediction 229 256 - -
Dod06g1570 707 SMART rav1_2 282 351 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 SMART rav1_2 381 445 IPR001471 GO:0003700|GO:0006355
Dod06g1570 707 Gene3D AP2/ERF domain 282 347 IPR036955 GO:0003700|GO:0006355
Dod06g1570 707 Gene3D AP2/ERF domain 381 441 IPR036955 GO:0003700|GO:0006355
Dod06g1570 707 SUPERFAMILY DNA-binding domain 380 441 IPR016177 GO:0003677
Dod06g1570 707 MobiDBLite consensus disorder prediction 156 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1570 Dod-Chr6 21196993 21201309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1570 256 466 AP2-EREBP Transcription Factor Family AT3G20840 85.981 4.46e-130 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod06g1570 AP2 3.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1570 K09285 - qsu:111984882 721.079