Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1562 ATGAGGTTTCTGATGGGGACTGAACTCATGAGAATGTGTGTTAAAGATGATAATGATGAGTTTCCATCAGTTCCACCAGGCTTTGAGTCATATACATCTTTCTCTCTAAAGAGGGAGGAAGACAATGAGAAACAAAATGATAAAACTGTTAACCGTTGTTCAGCCTCTACAAGTGCTTCTGAATCACATTCAACACAGGTAGAACCTAATATTGTTCTGGCCCTGTTGTCACCTATTGACAAAGCAGGCTCCATCACCTCTCATTCTAGTCAAGTTCGTGATAATGCAAAGGTCCCTAGGACCCTGAGACGAAGACCCTGGATTAACCATGGACGATATGAGCAGTGTTCAGATGAAGAATCTGATTGTGAGCGACTCGATCAAGTCAGTCCTATGTTGAATTTCTCTTCAAGGCCTGGTCTTCCTAGGGGAGTTATTCGTGGATGTCCAGACTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCAACCAGAAGATGCTCGTAGGCCAAACCTTGAGGATGCTCCTGTTTTCCACCCCACAGAAGAGGAGTTTCAAGATACTTTGAAATACATATCGAGCATTCGCTCCAGTGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCATCGTCTTGGAAACCCTCTTGTACTCTCAAGGAGAAAAGTATATGGGAGGGTTCTAAATTTGCTACACGTGTTCAGAGGATTGACAAACTTCAGAACCGTGAATCAGTGCAAAAGATGTTGAGGATTCAAAGTAACATGAAAAGGAAACGGAGAAGATGCACAAGAATGGGAGTGGAAATTGGCACTGGAACAGGACCTAGTCTAGGATTTTGTGAAGCCGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAGCATTTCAAAGATATGCGGATGATTTTAAGGCCAAATACTTCAGTAGAAATGAGAATGCATCTCATTTAGGTGACACTACAATGATTTTAGATGGAACCTTTGAGCCTTCCGTGGAGAACATTGAGGGTGAATATTGGCGGATGGTTGAGAGTCCTACTGAAGAAATAGAGGTGCTTTATGGAGCTGATCTGGAAACAGGGGTTTTTGGCAGTGGTTTTCCTACAAAGTCTAGTCATGTTGGTCCTGCTTCACATGAACATTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGCTACCTGGGTCTTTGCTCCATTATGAAAGCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAGGATCACCACTTATATTCCTTGAATTATATGCATTGGGGTGCTCCAAAATTGTGGTATGGTGTCCCTGGAAAAGATGCTTGCAAATTGGAAGACGCCATGAGGAAGCATTTACCGGATCTTTTTGAAGAGCAACCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCCATCCTAAAGTCTAAGGGAGTACCAGTTTATAGGTGTGTCCAAAACCCAGGAGAATTTGTTCTGACGTTCCCTCGAGCGTACCACTCTGGGTTCAATTGCGGCTTCAACTGTGCAGAGGCTGTTAACGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGATCTGTATCGCGAGCAGAGGCGCAAGACTTCTATATCCCATGATAAGCTGTTGCTGGGGGCTGCAAGGGAAGCAGTTCGAGCCCAGTGGGAGCTTAATTTGCTAAAGAAGAATACTCCAGATAATCTGCGATGGAAAGATGTCTGTGGAAAAGATGGCCTACTAGCTAATGCACTCAAGACGCGTGTTGAGATGGAGCGAGTAAGAAGGGATTTTCTGTGCAATTCTTCACATGCATTAAAAATGGAGAGTAGTTTTGATGCTAAAAGTGAAAGGGAATGCAGCATTTGCTTTTTTGATTTGCACTTATCTGCTGCTGGTTGTCGGTGTTCCCCGGACAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCGCTTGGGATTCCAAATTCTTCCTCTTTCGATATGATATTAGTGAACTGAATATACTTGTTGAGGCATTGCAAGGAAAATTAAGTGCAGTATACAGATGGGCTAAATTAGATCTTGGGCTTGCACTAACTTCTCATGTCACAGCAGACAAGGAAACAATACTTAAGGAATTGAGACTGCATTCATCAAACTTGTCTCTTTCTTCCAGGGCCAATGTGCATAAAGAGATGGCTTTGCATCGATCGAATAAATTCACTGAAGACTCTCAATTGATAGATGTCCCAATTATGGATCAAGCAAATTCAGTAAAAGGCAAAGATCAGAGCTATCTTCAGCCGAGGAAATTAGCAGAAGCTGTGTCTCCATTTAGTCACATGAAGGAACGTCCAACGTTCAATAGCACAACACCTACAAATGAGATGGCTAATAGTAAGACCTGTGTTAATAAAGAAGGATCTGTTGTTTGCAGATCAAAGCTAAGCCACCTTAGTTGTCAAATGTCTCAAGAGGACTTATCATGTGCTTTATCTCAGCCTCTTGCTGAACATGGAGGTGACAGAAGTTCACTATACAGACATAACAATATAACACATCTTAGTGATGATGATGGTGTTGAAATCAAGATGCCAGATTCAAATAGAAGGAAAGAGCTTCCTCATATAGATAAAGCAGGTTCATGTACCGAGATAGAAAATACAAACTTGACCATCCCTGTAACTGATGCTGCTGTTATGGTCGACAAGGGTGCTAACACATTTCCTCATGAAGATATGAGTTCTAATTCAACTCAGCTTTTGCATGTGAAAAAGGAATGCCATGAGAGCAGAAGACCAGTTCTAGCTTCTACCACAATAGATCTCTCTTGTCGTATAGGTCTTACTGGTGCAGAATCAGGTAGAAGTATTCCAGCCTCTTCGACAGGAGAGGCCAGCGATCATTGTCTGGAAAGTTCAGAGAGTTCTCCTCTGAACCCACAACATTCTGGCATGATCAAGGTTAAGAATGAGGATAATCGTGAAAAGTTTGGAGGACGTGCCACTTCTAGTGTAGCAGACAATGCAAGAGCTGTTAATGGAAACATTTCTTGTGGTCTAAACAATTACCGTCAGAAAGGTCCGCGTATAGCAAAGGTTGTCCGGCGTATCAACTGCAATGTTGAACCTTTAGAATTTGGAGTTGTGCTTTCTGGAAAGTCATGGTGCAGTAGTCAGGCTATATTTCCAAAGGGATTCAGAAGCCGTGTTAGATACATAAATTTCTTAGATCCATCCACTATGTGTTATTACATATCAGAAATTCTTGATGCTGGACGTGACAGGCCTCTATTTATGGTTTCTTTGGAAAATTGTCCTGGTGAGGTCTTCATTCATATTTCAGCTACAAGATGCTGGGAACTGGTAAGAGAGAGAGTGAATCAAGAGATTGCCAAACAACATAAGCTGGGAAGAAAGGGTCTTCCTCCTCTACAGCCTCCTGGAAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCTATAGTGCAGGCTATTGAGGCACTGGATAGAAATCGAGTTTGTAATGAATATTGGGATTCTCGGCCCTACTCTCGGCCTCAAGGGCAGATTTCACATCGTTACCAAACCAATGCAAATGGTGGAAATGGTGAAGGGGTTCCCATGAATCAGCAGCACTTACCCAATGGAGGAGTTGTTACAGCATTAAAGAGCCTATTTAAAAAGGCCAATGCTGAAGAACTGAACTCATTGTACAGCATTCTTAGTGATAATAAGCCAGCGGCTGAGCGGGTCCTAATTGCACAACTTCTAAATGAAGAGATTCACAAATCACAACCGTCCTAG 3861 0.4258 MRFLMGTELMRMCVKDDNDEFPSVPPGFESYTSFSLKREEDNEKQNDKTVNRCSASTSASESHSTQVEPNIVLALLSPIDKAGSITSHSSQVRDNAKVPRTLRRRPWINHGRYEQCSDEESDCERLDQVSPMLNFSSRPGLPRGVIRGCPDCSNCQKVVARWQPEDARRPNLEDAPVFHPTEEEFQDTLKYISSIRSSAEPYGICRIVPPSSWKPSCTLKEKSIWEGSKFATRVQRIDKLQNRESVQKMLRIQSNMKRKRRRCTRMGVEIGTGTGPSLGFCEAERFGFEPGPEFTLEAFQRYADDFKAKYFSRNENASHLGDTTMILDGTFEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPTKSSHVGPASHEHYIKSGWNLNNFARLPGSLLHYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDACKLEDAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIDLYREQRRKTSISHDKLLLGAAREAVRAQWELNLLKKNTPDNLRWKDVCGKDGLLANALKTRVEMERVRRDFLCNSSHALKMESSFDAKSERECSICFFDLHLSAAGCRCSPDRYACLDHAKQFCSCAWDSKFFLFRYDISELNILVEALQGKLSAVYRWAKLDLGLALTSHVTADKETILKELRLHSSNLSLSSRANVHKEMALHRSNKFTEDSQLIDVPIMDQANSVKGKDQSYLQPRKLAEAVSPFSHMKERPTFNSTTPTNEMANSKTCVNKEGSVVCRSKLSHLSCQMSQEDLSCALSQPLAEHGGDRSSLYRHNNITHLSDDDGVEIKMPDSNRRKELPHIDKAGSCTEIENTNLTIPVTDAAVMVDKGANTFPHEDMSSNSTQLLHVKKECHESRRPVLASTTIDLSCRIGLTGAESGRSIPASSTGEASDHCLESSESSPLNPQHSGMIKVKNEDNREKFGGRATSSVADNARAVNGNISCGLNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINFLDPSTMCYYISEILDAGRDRPLFMVSLENCPGEVFIHISATRCWELVRERVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRNRVCNEYWDSRPYSRPQGQISHRYQTNANGGNGEGVPMNQQHLPNGGVVTALKSLFKKANAEELNSLYSILSDNKPAAERVLIAQLLNEEIHKSQPS* 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1562 1286 SMART fyrc_3 1114 1208 IPR003889 GO:0005634
Dod06g1562 1286 Pfam JmjC domain, hydroxylase 417 533 IPR003347 -
Dod06g1562 1286 PANTHER JUMONJI 14-RELATED 1035 1283 - -
Dod06g1562 1286 PANTHER JUMONJI 14-RELATED 113 784 - -
Dod06g1562 1286 SMART cupin_9 387 550 IPR003347 -
Dod06g1562 1286 MobiDBLite consensus disorder prediction 32 65 - -
Dod06g1562 1286 MobiDBLite consensus disorder prediction 971 1000 - -
Dod06g1562 1286 MobiDBLite consensus disorder prediction 970 1001 - -
Dod06g1562 1286 ProSiteProfiles JmjC domain profile. 387 550 IPR003347 -
Dod06g1562 1286 Gene3D Cupin 160 534 - -
Dod06g1562 1286 Pfam C5HC2 zinc finger 640 690 IPR004198 -
Dod06g1562 1286 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1035 1283 - -
Dod06g1562 1286 PANTHER LYSINE-SPECIFIC DEMETHYLASE 113 784 - -
Dod06g1562 1286 SUPERFAMILY Clavaminate synthase-like 385 577 - -
Dod06g1562 1286 MobiDBLite consensus disorder prediction 49 65 - -
Dod06g1562 1286 Pfam F/Y-rich N-terminus 1063 1105 IPR003888 GO:0005634
Dod06g1562 1286 SMART fyrn_3 1064 1108 IPR003888 GO:0005634
Dod06g1562 1286 ProSiteProfiles FYR domain FYRC motif profile. 1110 1200 IPR003889 GO:0005634
Dod06g1562 1286 ProSiteProfiles JmjN domain profile. 175 216 IPR003349 -
Dod06g1562 1286 SMART JmjN_1 174 215 IPR003349 -
Dod06g1562 1286 MobiDBLite consensus disorder prediction 34 48 - -
Dod06g1562 1286 ProSiteProfiles FYR domain FYRN motif profile. 1050 1108 IPR003888 GO:0005634
Dod06g1562 1286 Pfam jmjN domain 176 209 IPR003349 -
Dod06g1562 1286 Gene3D - 1057 1194 - -
Dod06g1562 1286 Pfam F/Y rich C-terminus 1112 1196 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1562 Dod-Chr6 21076071 21086713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1562 5 1281 JUMONJI Transcription Factor Family AT1G08620 53.298 0.0 1249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod06g1562 JmjC 1.8e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1562 - - gmx:100800271 2020.36