Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1560 ATGGCGCACAGGTTGCTGAGGGACCACGAAGCCGACGGTTGGGAACGCTCTGACTTCCCCATCATCTGCGAGTCCTGCCTCGGCGACAGCCCTTATGTTCGCATGACAAAGGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTTACTGTTTTTAGATGGAGACCTGGTCGAGAGGCAAGATATAAGAAAACTGAGATCTGCCAGACATGTTGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTGGAATATGGGCTGCCAGTTCAAGTCCGTGACACGGCTCTCAGTATCGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTCGCTGAGGAGCACGACCGCAGGGCTAGAGCTGGTATAGATTATGAATCTTCCTATGGCAAAGCACGGCCAAATGATACTATCCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACACATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGGCATGAGATGCCAGAAACTGGAGAGTTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTAAATGATCCGGTGGCTTTGAAGCTACTTGGTAAGGCTGGAGAGATGACCTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACACTTTATGTTGGTGGACTTGATGCCAGGGCCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCACGGCGAAATTGAATCTATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTATACAACTAGAGAAGGTGCGGAAAAGGCGGCAGAAGAACTCTCCAACAAATTGGTTATCAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGTCATCAAAACCTGAGTCAGATGGCACTGACCAAGCAAGGCAGCAGCAAGCATCCGTGGCTCACAGCGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGCTTTACTATAACAATCCACCACCTCCTCCTCAGCAGGGAAGAAGCTATTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCTCAAGAGGGTCCTCCTGGATCAGGGGAGAACAAACCTGATTTGGAGGAGCAGCCAATGCAACACCATGCCCATCCAATGGTGCCTCCTCCTCATGGCCAATATCATCATCAGTATTATCCTCCTCCTCCATATGGTTACATGCCACCACCTCCCCCTTATCAACAATACCCACCACCATACAGTGCTGCAATGGCACTGTCGCAGCCACCGGCTGCAAATCACCCCTATCAGCATCCTATGCAAACAGGGTCTTCACAAACAGGGTCTGCACAGGCTGGTTCTGGATCTCTGCCAGGTGAAGCTGGAGCATCAACATCAGGGTCATAG 1452 0.4876 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGREARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDARATEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSSKPESDGTDQARQQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPPPQQGRSYYPSMDPQRMGALIPSQEGPPGSGENKPDLEEQPMQHHAHPMVPPPHGQYHHQYYPPPPYGYMPPPPPYQQYPPPYSAAMALSQPPAANHPYQHPMQTGSSQTGSAQAGSGSLPGEAGASTSGS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1560 483 MobiDBLite consensus disorder prediction 299 321 - -
Dod06g1560 483 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Dod06g1560 483 Gene3D - 149 206 - -
Dod06g1560 483 SMART rrm1_1 229 297 IPR000504 GO:0003723
Dod06g1560 483 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Dod06g1560 483 MobiDBLite consensus disorder prediction 304 321 - -
Dod06g1560 483 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 454 IPR039171 GO:0003723
Dod06g1560 483 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
Dod06g1560 483 MobiDBLite consensus disorder prediction 409 433 - -
Dod06g1560 483 MobiDBLite consensus disorder prediction 449 483 - -
Dod06g1560 483 Pfam Torus domain 139 194 IPR032297 -
Dod06g1560 483 CDD RRM_RBM22 227 300 - -
Dod06g1560 483 MobiDBLite consensus disorder prediction 335 483 - -
Dod06g1560 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Dod06g1560 483 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 454 - -
Dod06g1560 483 Gene3D - 213 343 IPR012677 -
Dod06g1560 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Dod06g1560 483 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1560 Dod-Chr6 21027922 21032170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1560 220 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 2.41e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1560 K12872 - gmx:100779917 809.29