Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1557 ATGAAGGGTGGGCGATCGTCGCACCACCGGCCTCAGAGCTCGGACCCACCGCCGGACGAGTGGGTGGACGGTTCATGGACCGTGGACTGCATCTGCGGCGTGACGTTCGACGACGGCGAGGAGATGGTCAAGTGCGACGAGTGCGGCGTCTGGGTCCACACCCGCTGCTCCCGCTACGTCAAGGGGGAAGAAACCTTCTCATGCGACAAGTGCAAGCCCCAAAACGACGACAACCATCACCACCACCACCACCAACACCGCAAACCCCAACACCACCACCACTGCCACCCCTAA 294 0.6293 MKGGRSSHHRPQSSDPPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGEETFSCDKCKPQNDDNHHHHHHQHRKPQHHHHCHP* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1557 97 MobiDBLite consensus disorder prediction 1 24 - -
Dod06g1557 97 MobiDBLite consensus disorder prediction 79 97 - -
Dod06g1557 97 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 80 IPR013083 -
Dod06g1557 97 PANTHER UNCHARACTERIZED 1 78 - -
Dod06g1557 97 ProSitePatterns Zinc finger PHD-type signature. 30 71 IPR019786 -
Dod06g1557 97 SUPERFAMILY FYVE/PHD zinc finger 19 77 IPR011011 -
Dod06g1557 97 SMART PHD_3 29 72 IPR001965 -
Dod06g1557 97 Pfam PHD-finger 30 73 IPR019787 -
Dod06g1557 97 MobiDBLite consensus disorder prediction 75 97 - -
Dod06g1557 97 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SET-26-RELATED 1 78 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1557 28 71 PHD Transcription Factor Family AT5G22260 48.936 8.76e-09 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod06g1557 PHD 6.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1557 - - gmx:100810855 151.754