LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod06g1512	ATGGCAACTAGACTGCAGTTTGAGAATTCTTGTGAAGTTGGAGTGTTTTCAAAACTTACCAATGCCTACTGTTTGGTTGCCATTGGCGGCTCCGAAAGCTTTTACAGTGTGTTTGAGGCTGAGCTAGCAGATGTTATCCCTGTGGTCAAAACCTCTATTGGTGGAACTCGTATTGTTGGTCGGCTTTGTGTTGGAAACAAGAATGGGCTTCTCTTACCCCATACCACCACAGACCAAGAACTTCAACATTTGAGGAATAGTTTACCTGATCAAGTTGTTGTTCAGCGCATAGACGAAAGATTGTCCGCTCTGGGAAATTGTATAGCATGTAACGATCATGTGGCCCTCACACACACTGATCTTGACAAGGAAACTGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAAACCATCGCTGGCAACATTCTCGTAGGCAGTTACTGTGCCATCTCCAACAGAGGTGGTTTGGTAAGAAGACAGACTTGTTATCATGAAACTTGTAATATAGAAATGTGTACTGTCTTATTGACCATACACTTTGTGCAGGTCCACCCTCATACTTCCATTGAAGACTTGGATGAACTTTCGACGCTTCTTCAGGTTCCTTTGGTAGCTGGGACTGTCAACCGGGGTAGCGAAGTAATAGCTGCAGGCATGACGGTAAATGATTGGACAGCATTCTGTGGTTCAGATACCACAGCAACAGAGCTCTCTGTGATTGAGAGTGTTTTCAAGCTAAGGGAAGCTCAGCCTAATGCCATTGTCGATGAGATGAGGAAATCCCTCATTGATAGCTATGTCTGA	816	0.4436	MATRLQFENSCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIVGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTIAGNILVGSYCAISNRGGLVRRQTCYHETCNIEMCTVLLTIHFVQVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV*	272

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod06g1512	271	PIRSF	Transl_init_IF-6	1	179	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	PIRSF	Transl_init_IF-6	175	252	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	SMART	eIF6neu2	3	230	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 6	187	271	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	Hamap	Translation initiation factor 6 [eif6].	1	271	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 6	1	169	-	-
	Dod06g1512	271	Pfam	eIF-6 family	4	174	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	Pfam	eIF-6 family	183	229	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	TIGRFAM	eIF-6: putative translation initiation factor eIF-6	4	173	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	SUPERFAMILY	Pentein	185	250	-	-
	Dod06g1512	271	CDD	IF6	2	249	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 6	1	169	IPR002769	GO:0042256\|GO:0043022
	Dod06g1512	271	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 6	187	271	-	-
	Dod06g1512	271	Gene3D	-	175	251	-	-
	Dod06g1512	271	Gene3D	-	1	174	-	-
	Dod06g1512	271	SUPERFAMILY	Pentein	1	173	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod06g1512	Dod-Chr6	20207782	20211848	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod06g1512	1	271	Eukaryotic Initiation Factors Gene Family	AT3G55620	82.288	1.52e-166	459

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod06g1512	K03264		-	ming:122062855	462.611

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod02g3212	02	67092189	67122770	Dod06g1512	06	20207782	20211848	PCT