Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1502 ATGGTCGTGAGCGGAGGGAAGCCGTTGAAACGCATGAAGAGGAGAGTCACCGCAGACTTCTACGACTTCCTTTCGTTCCCGTCGCCGTCCCTCGCCGCATCGGAGGGTTTCGCCGGCGGTCCCTTCCGGTCCGCCGTCCGATCCTTCCTCACCAAGCACGCGCTGCTCCCGCCGCCGTCTGCGCTCTTTCCTCACCTGCTGACGTGGCAGATCCTCTTCCGCGTCGGCGATGTCGCCGCCGACGGCGGCTGTAGCGGTGGCGGTGCGGAGTCCGGTCCGGCGGCGGTGTGCCTCGACGTCGTGGAGGAGGACGTGGCTAGATCCAGATCTGTCTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGTCACCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCTGATGGGAGCTCCATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGTGATATCCTGCACTTGTCAGAGTCCAAGTGCAAGTCATGCAACCATGTGACTACCACTGATGATGTTGAAGACTGGGTGTACCAGCAGTTAGAGAACACGACTCATCTCTTACATGGTGTTGTCCATGCCAATGGTTATGGGCATCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGCTGCCATATTATGGATTTCTGGGATCGCCTCTGCAAGACACTTGGAGTCAGAAGGGTTAGCGTGATGGATGTTTCAAAGAAATATGGGCTGGAGTACCGCCTACTCCATACAGTCACGAAGGGACATACATGGTATGGTGACTGGGGTTATCATTTTGGCTCTGGTAGCTATTGCCTCACACAAGAAGCTTATAATTCTGCCGTTGACAACCTATCCAATCTACCCTTGTCCATCTACCTTTCCCAGGGACAAAATTCTTCCCACTCACGTGTGCTGGGCATGATCTCATATTTCCAGTCTTTGTCGGACCTTAAGCTTGTAAATATCAGGGACCTCTTTTGTTTTTTAATGCGTTTGATTCATGATGCTCGTAAGACTGCGTCAAAGGTTGATGACATGGCCTGCAAGAAGCGCCGTTTTAATGCATCTGGACCATCATGTTCTTGGGAGAAGAGTGACATTGAACGTGTGGAGGCAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGGTCAACTTGGGTGAGTTGGCGTGCACTCAGAGGTGCTGTGTGCAAGGTGGCCTCTCCGGAGCTTCTTGATTATTGCCTTGGAGAACTGGGAGGAAAAGTGGTCTGTGGTGGAATGGTTGTTAATACCCGATGCAACCCTCAAACTGGAGCTTATGAGTACAGACTTGAGGCTGCAAACAGTTCTTGCTTTGAAATTATGGCGAGCAATAATTCTTCAGGGTCAAAGTATCCATCCGAAGAGAATCTCCTACAGTGCTTGAGATATTTATATGAGTCTTTGCTTCATCCTCAGATGATGGTAAACTACGTCACAGAAGGGACAAGGACTCTTGCAGTGAGCTCAGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTAAAAGATTATAGTCCTGAAAGGTTACCGATATCAGATTTGCATAAAATAAGAATCTCATGTCAGGTTGAACTAGTGGACGAATCTGAAGATTCTGCAGCTAAAACTCCACCAGAACTAATTGTACTGCCCACAAATGCCACGGTGTTAGACCTTAAGATTGAAGCAGCAAATGCTTTTCAAGATGTGTATTTGATGTTTAGAAGATTGCAAGTTGATGAGCTACTTGGCTATAGCGGTGTAGAAGATTCCACCCAGGTCAAGCTCTTATTAGGATCAGAAGAAGCAGTTTTTGTCCGAGGAAGATGCATTGGGAAGAATGGGTTGAGCAAGTTCCGAATGGAAAGGGGACTTGAGAGGTGGACTGTAGATTGCAACTGTGGGGCTAAGGATGATGATGGGGAGAGAATGTTGGCTTGTGATATGTGCGGTGTGTGGCGGCACACCAGGTGTTGTGGCATTTGTGATACCGATCCTGTTCCGGCGCGTTTTGTTTGCCCGAGATGCCAAAACTCAGACCCAAAGCCTAAGTCTAGTGGGCACTGCAAAGATGTGCCAGTGACTAACGTTAGTGCTAGTAGTAGTTGCTTTGGAAATGGCTTGCCAGTGCCTTCTGATGTTCGTTAG 2160 0.494 MVVSGGKPLKRMKRRVTADFYDFLSFPSPSLAASEGFAGGPFRSAVRSFLTKHALLPPPSALFPHLLTWQILFRVGDVAADGGCSGGGAESGPAAVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYQQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRRVSVMDVSKKYGLEYRLLHTVTKGHTWYGDWGYHFGSGSYCLTQEAYNSAVDNLSNLPLSIYLSQGQNSSHSRVLGMISYFQSLSDLKLVNIRDLFCFLMRLIHDARKTASKVDDMACKKRRFNASGPSCSWEKSDIERVEAAMLRVLRAVSGSTWVSWRALRGAVCKVASPELLDYCLGELGGKVVCGGMVVNTRCNPQTGAYEYRLEAANSSCFEIMASNNSSGSKYPSEENLLQCLRYLYESLLHPQMMVNYVTEGTRTLAVSSAQKLLDCKQFVKDYSPERLPISDLHKIRISCQVELVDESEDSAAKTPPELIVLPTNATVLDLKIEAANAFQDVYLMFRRLQVDELLGYSGVEDSTQVKLLLGSEEAVFVRGRCIGKNGLSKFRMERGLERWTVDCNCGAKDDDGERMLACDMCGVWRHTRCCGICDTDPVPARFVCPRCQNSDPKPKSSGHCKDVPVTNVSASSSCFGNGLPVPSDVR* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1502 719 ProSitePatterns Uncharacterized protein family UPF0054 signature. 191 201 IPR020549 -
Dod06g1502 719 Pfam PHD-finger 636 682 IPR019787 -
Dod06g1502 719 SUPERFAMILY FYVE/PHD zinc finger 625 684 IPR011011 -
Dod06g1502 719 SMART PHD_3 635 681 IPR001965 -
Dod06g1502 719 PANTHER OS01G0877500 PROTEIN 1 691 - -
Dod06g1502 719 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 691 - -
Dod06g1502 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 686 IPR013083 -
Dod06g1502 719 CDD PHD_MMD1_like 635 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1502 Dod-Chr6 20109058 20114250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1502 93 680 PHD Transcription Factor Family AT5G22260 29.450 3.63e-82 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod06g1502 PHD 5.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1502 - - gmx:100818189 1174.84