Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1463 ATGGTAGGACTGGAGATCATACCAATAGGTACAATTATAGCTGTGCTAACCAACCAGGTCTTGAAAACTGCTCATGCAGCAGCTGATGTTCTTATTGGCAAAGAATGTTTCAAGGTCCTTTCTAGACACCTGTTTGATATTGAGCCTGTGCTGAAGGAATTACAGGGTCAGGAACTAAATGAATCTCAGGCTGCAAGGGTTGCTGTGGAATCTCTTGAAGCAGATGTTAAAAGGGCAAATAATTTGGTCGAGAAGTACAGGAATCGCGGCCGATTTTACCTGCTGTTTAAGTGCAGATACATAGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGGAAGTCTCTGGCTGCACTCTCTCTAGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTTGATAGGTTACAGAATGAGATGCAAAGGGTGCAGTTTGAGGCCTCGCAATCTCAGCTTCAGATTGTTGACAAGTTGGACCAGGGAATTAGAGAACAGAAACTAGATCAGGATTTTGCAAATGACATGCTTGAGGAGATAGCAAGGGCTGTTGGGGTGCCGGTGGAACCTTCAGAGATAAGCAAAGAAATGGCCAGCATTAGGAGGGAAAAGGAAGATGCTGCCAACCGAAAAGAAAGAGCTGAGTTCATTTTCTTGGAGCAGATTATTGAGTTGCTCTCTAGGGCTGATGCAGCAAGGGACTATGAAGAAGTTAAGAAGCAATACTTTGAAAGGGTTCAGAAGATAGAGAGATATGATTCCAGGGAAAAGTATATCCAACCACTTAATCCGTTCCTTTGTTCAATAACTGGAGCTGTTATGGTTGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCGATTGAAGGTTGGTTTTACGATGGGAACAGGACGGACCCGGAGACAGAGATGGTTCTTGAAGACACAACCTTGAGGTCTAACACTCCACTAAGGCAATCCATAGAAGAATGGAGAGAGCTTAATTACTGTCTTGAAATAAGGTCCATCAGGGAAAAGTTATTATCAAATTCTGACCTGCAAGAGTCTTTGAGCCAAATGCAGGCTCTCATAAGAGAGAATTCTATCAACAAGGATTGGATTTCTATAGGAAGGCTTACTGATACTGTTATCTCTATCCTTGGGAACACTGATAACACTGAAGTGAAGATGAAGATTTTGATTACTTTGATGGATGTTGTAGAGGGGCATGCAAGAAACAAGGAGAAAGTGGCTGAGTCTCAAGGATGGGATCACATTATTTTCTGCTTGGGGAGAGACTCTGGCGTTTCAAAGGCAGCGATTGATTTGCTATACGAGTTGCTTCAACACCGATCTGGTTGGAATGAGTGTTTCTGCAAAAAACTCTCCCAGAATCGTAATGCAATTCCTTTCCTTGTCGCCTTTCTTAAGAGACCTACCAATGATTCAGCTGAGGTTGCAGAAAAGATTTTGACAAAGCTTTTTGAAATAGATGAGGAGAGCATTACCACGGCTGCTAGATTTGGCTGGTATAAACCTCTTGTCAATCGAATGATTCAAGGACCGGATTCAAGAATATCAATGGCAAAAGCCATTGTTAACTTGGAGTTGAATGTTTTAGACTTGAAGCTCCTTGGTGAGGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGTCTGGAAGTATTGAATCAAAAGATTTGTCACTATCAGCTCTGGTTAAACTAGCAGGGTGTCATGCCAATAAGGGAATAATTGCTGCATCTGGAGGAGTTCCTCTTATTCTAGATTTGATGTTCTCTGCAAGGATGAGGACTTTCATTGCCATTAAATGCTGTGAAATCATTGAGATGCTTTCTTCTGATGATGATGGAATTGACTTCTTTGTAGATAGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAATTTGCTAGCTTTGCAGCAGAGTTTCAGTCCAGGCAACAACCTCTGCAAGCCTGCACTGCGCGCTCTTCTTGGCATTTGCAAGTTCGAGACTGGCTTAGTTAAGAAGGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTCGATGACTCTGACTCAGAAATCCGGGAGACTGCCATAAACCTGCTCTTTCTTTTCTCTCAGCATGAGCCAGAAGGAGTAGTTGAATACCTCTTCAAGCCTAGAAGGCTGGAAGCTTTGATTGGATTTCTCGAGAACGATGACAATGACAATGTGAGGATGGCTGCTGCTGGTTTACTAGCCAACCTTCCGAAATCGGAACGAGAACTCACTACCAAGTTGATTGAATTGGGTGGACTTGATGCAATAATAAGCATTCTGAAAACTGGCACAATGGAAGCCAAAGAAAATGCCCTCAGTGCACTCTTCAGGTTCACGGATCCTACAAATATCGAGTCGCAGCGAGATCTGGTTAAACGCGGAATATATCCTTTACTTGTGAACTTTCTCAACACCGGTTCAGTCACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTATCTATGAGCACCCCAAAGCTCACAGTTGTTTCCAAATCAACCGGTTGCTTGTTTTTCAAGTCATCGCGGGTTCCCTTGTGTTCAGCACATGGGAGTGTATGCAGTGTGGCTACCACATTCTGTCTGTTGGAGGCAGATGCTTTGCCTGGCTTGATAAAGCTGCTGCATGGGGAGCATGCAACTGCTTATGAAGCAATTCAGACACTTTCCACATTGGTTTTGGAGGACTATCCTCAAAGGGGTGCCCGTGTGTTGCATCACTCCAATGCAATAAGACCCTTACTGGACATTTTGAACTGGGGTACTGAGTCTCTCAAGGCAGAAGCTCTAGGACTCTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTAGATTACTATGGAACAACAGCTAGGTTGCGTCTAATTAGTCTTACTGGCATGAACATATATGGAGATGGCCACCTCAGGAGAAAGGCTGCCAAGGTACTATCATTGCTTGAGCGCTATTCAAAGTCATCATCTTCTGCAATCTCTGGTGTTCCAGAGTGA 3039 0.4344 MVGLEIIPIGTIIAVLTNQVLKTAHAAADVLIGKECFKVLSRHLFDIEPVLKELQGQELNESQAARVAVESLEADVKRANNLVEKYRNRGRFYLLFKCRYIVEEVEQVTRDIGKSLAALSLANTEVLSRISDQVDRLQNEMQRVQFEASQSQLQIVDKLDQGIREQKLDQDFANDMLEEIARAVGVPVEPSEISKEMASIRREKEDAANRKERAEFIFLEQIIELLSRADAARDYEEVKKQYFERVQKIERYDSREKYIQPLNPFLCSITGAVMVDPVSLCTGTTCERSAIEGWFYDGNRTDPETEMVLEDTTLRSNTPLRQSIEEWRELNYCLEIRSIREKLLSNSDLQESLSQMQALIRENSINKDWISIGRLTDTVISILGNTDNTEVKMKILITLMDVVEGHARNKEKVAESQGWDHIIFCLGRDSGVSKAAIDLLYELLQHRSGWNECFCKKLSQNRNAIPFLVAFLKRPTNDSAEVAEKILTKLFEIDEESITTAARFGWYKPLVNRMIQGPDSRISMAKAIVNLELNVLDLKLLGEEGVIPPLLEMLSGSIESKDLSLSALVKLAGCHANKGIIAASGGVPLILDLMFSARMRTFIAIKCCEIIEMLSSDDDGIDFFVDREGKQLELDSIITNLLALQQSFSPGNNLCKPALRALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVRMAAAGLLANLPKSERELTTKLIELGGLDAIISILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVVSKSTGCLFFKSSRVPLCSAHGSVCSVATTFCLLEADALPGLIKLLHGEHATAYEAIQTLSTLVLEDYPQRGARVLHHSNAIRPLLDILNWGTESLKAEALGLLEKVFVSKEMVDYYGTTARLRLISLTGMNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVPE* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1463 1012 SUPERFAMILY RING/U-box 247 329 - -
Dod06g1463 1012 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Dod06g1463 1012 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1009 - -
Dod06g1463 1012 SMART arm_5 799 839 IPR000225 GO:0005515
Dod06g1463 1012 SMART arm_5 534 573 IPR000225 GO:0005515
Dod06g1463 1012 SMART arm_5 872 911 IPR000225 GO:0005515
Dod06g1463 1012 SMART arm_5 712 754 IPR000225 GO:0005515
Dod06g1463 1012 SMART arm_5 574 616 IPR000225 GO:0005515
Dod06g1463 1012 SMART arm_5 756 796 IPR000225 GO:0005515
Dod06g1463 1012 SMART arm_5 406 445 IPR000225 GO:0005515
Dod06g1463 1012 SMART arm_5 670 710 IPR000225 GO:0005515
Dod06g1463 1012 SMART arm_5 915 955 IPR000225 GO:0005515
Dod06g1463 1012 Gene3D - 8 123 IPR036537 GO:0007166
Dod06g1463 1012 Gene3D - 539 645 IPR011989 -
Dod06g1463 1012 Gene3D - 646 855 IPR011989 -
Dod06g1463 1012 Gene3D - 342 538 IPR011989 -
Dod06g1463 1012 Gene3D - 857 1008 IPR011989 -
Dod06g1463 1012 SUPERFAMILY ARM repeat 634 1000 IPR016024 -
Dod06g1463 1012 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Dod06g1463 1012 Coils Coil 127 154 - -
Dod06g1463 1012 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1009 - -
Dod06g1463 1012 Coils Coil 62 89 - -
Dod06g1463 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 338 IPR013083 -
Dod06g1463 1012 SUPERFAMILY ARM repeat 368 713 IPR016024 -
Dod06g1463 1012 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1463 Dod-Chr6 19602124 19607998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1463 265 969 U-box Gene Family AT1G20780 27.490 1.45e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1463 - - gmx:100783638 1620.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1463 06 19602124 19607998 Dod06g1463 06 19602124 19607998 ECH