Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1456 ATGGCAACTCTGGTGGGAAAGGAGCATGGCTTGAACCTGAAGGAGACTGAGCTTTGCCTTGGTTTGCCTGGTGGTGGTGGAGATGGCGGCGGTGGCGGTGGCGGTGGTTCTGAGGTGGAAACACCAAGGGCCACTGGGAAGAGGGGTTTCTCTGAGACAGTTGATTTAAAGCTTAACCTTCAAGCCAACAACAAGGAAGATCTGGATGAGAAACTGAAGAATGTCTCAAAGGAGAAGACCCTCCTTAAGGACCCTTCCAAGCCACCAGCCAAGGCTCAAGTCGTTGGTTGGCCACCTGTGAGGTCATACAGGAAGAACATGATGGCACAGAAAGTTAACAGTGAGGAAGGCACTGATAATAAGAAGACAACAAACAACACTGCTTCTGGGGCATTTGTCAAAGTCTCCATGGATGGAGCACCTTACCTCCGCAAGGTGGACTTGACAATGTACAAAAGCTACCAAGAATTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATTGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCTATTGGGCTCGCACCAAGAGCCATGGAAAAATGCAAAAACAGAAGCTGA 747 0.4833 MATLVGKEHGLNLKETELCLGLPGGGGDGGGGGGGGSEVETPRATGKRGFSETVDLKLNLQANNKEDLDEKLKNVSKEKTLLKDPSKPPAKAQVVGWPPVRSYRKNMMAQKVNSEEGTDNKKTTNNTASGAFVKVSMDGAPYLRKVDLTMYKSYQELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1456 248 ProSiteProfiles PB1 domain profile. 130 230 IPR000270 GO:0005515
Dod06g1456 248 Coils Coil 58 78 - -
Dod06g1456 248 MobiDBLite consensus disorder prediction 18 52 - -
Dod06g1456 248 Gene3D - 124 242 - -
Dod06g1456 248 Pfam AUX/IAA family 44 239 IPR033389 -
Dod06g1456 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 241 IPR003311 GO:0005634|GO:0006355
Dod06g1456 248 SUPERFAMILY CAD & PB1 domains 123 229 - -
Dod06g1456 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 7 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1456 Dod-Chr6 19460713 19462769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1456 128 233 B3 DNA Binding Superfamily AT3G61830 33.962 4.37e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Dod06g1456 AUX_IAA 1.8e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1456 K14484 - gmx:100810762 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1456 06 19460713 19462769 Dod06g1456 06 19460713 19462769 ECH