Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1454 ATGTCGACGGGGCAAGCGGTGAAGGTCAGCAGGGCGAAGCTCTCGGCATGCTTAACATGTCCTTTGTGTAATAAATTCTTCAGAAATGCCACCACTATATCTGAATGCTTGCACACTTTTTGCAGGGAATGCATAGAGAAGAAGCTAATAGATGAGAATTTGAAGCACTGTCCTGTATGCAAAGTTGACTTGGGTTGTTCTCCATTGGATAAATTAAGGCCAGATCACAATCTGCAAGATCTGAGGAACAAACTTTTGCCTCCTGAAGGAAAAAGTGATGAGGCACCTCACAATGAGGATTCAGGTGATGCATTGGTAGCCAAAAGAAAGACGAAATCTCTGTCTTCGTTAAAAGCCAATGCAAGAGGAGCAAAAGCTACTGAAAGAAAAGTTTCCAACCCAAAAGAATCAGATTTTCCTACTCCTCCTAAGCCTGATAAGGATGCAGATGTCAAGAAAGATGAAAAAGAGCGCACCATAGGGATTTTGGATGAAGTTAATGTACATATATCTGCAAGAAAAGCAAAAGCTGCGGCGAGGAAAAAATTTGTCCCAAGAGAGTTCACTCCTACTCGTCAACCTGACAAAGTAACAGGAGATCAGAAGAAAGATGATGGCCACCTTCAGCTTCAAACTTCCAAAACCAGAATTCAGAAGGCTTCAAGACCAGATTCAAGTCAACAAATAGTTCCCAACAAGATTGCAGTGGACAATGGTGATGAGTCATGGAAAGACAAGGCTGATATGTGTGATGAGCCATTGAATAGCCTGGTGGAATCTGCAAGAAAGAACAAATCCAGTAATAAGTCCACCATGAAAGGCAATTCTGTCATTCCACTGCCTGTGGAACCAAGTAACAATGACTCCCCGGTGCCTAAGGTTGAAGTTAAGAAAAATTGTCTCCTAGACCAAGCAACCGGTGATCAAACCGAATCGAATCCTTCAAAATCAGATTCTATCAAACCTAGAACGTCGCAGGGCACCCAAGAAAGAGCGGCCAAATTCTCTGAGGACTTGAATGTTCCAGCACAACCCGTGATTACTTCAAATGGTGAAAGCAACAATGGATTCAGTCCAATTTGGTTCTCCTTGGTTGTTTCTGAAGAGAAGGAAGCTGGTGCACAATTGCCACAAATATCTTCAGGCTACCTAAGGATCAAGGATGGTAGTTTACCTGTTTCCTTTATCAAGAAGTATATAGTGAAGAAACTGGGTCTTGCCAGAGAATCCGAGGTGGAGATCTCAGTGCGTGGTAAGCCAGTTTTAGCTTCCTTGCAACTGCAAAACGTAGTAGACATGTGGTTGCAAACAAAGCCAACCAATGAGAAGATTCAGACATATGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATATGGTCGAGCAGATTAA 1398 0.4263 MSTGQAVKVSRAKLSACLTCPLCNKFFRNATTISECLHTFCRECIEKKLIDENLKHCPVCKVDLGCSPLDKLRPDHNLQDLRNKLLPPEGKSDEAPHNEDSGDALVAKRKTKSLSSLKANARGAKATERKVSNPKESDFPTPPKPDKDADVKKDEKERTIGILDEVNVHISARKAKAAARKKFVPREFTPTRQPDKVTGDQKKDDGHLQLQTSKTRIQKASRPDSSQQIVPNKIAVDNGDESWKDKADMCDEPLNSLVESARKNKSSNKSTMKGNSVIPLPVEPSNNDSPVPKVEVKKNCLLDQATGDQTESNPSKSDSIKPRTSQGTQERAAKFSEDLNVPAQPVITSNGESNNGFSPIWFSLVVSEEKEAGAQLPQISSGYLRIKDGSLPVSFIKKYIVKKLGLARESEVEISVRGKPVLASLQLQNVVDMWLQTKPTNEKIQTYVGSSAKDFVMVLSYGRAD* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1454 465 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 6 463 IPR044807 GO:0004842
Dod06g1454 465 MobiDBLite consensus disorder prediction 211 233 - -
Dod06g1454 465 CDD RING-HC_PCGF 18 60 - -
Dod06g1454 465 MobiDBLite consensus disorder prediction 238 252 - -
Dod06g1454 465 MobiDBLite consensus disorder prediction 259 283 - -
Dod06g1454 465 MobiDBLite consensus disorder prediction 81 155 - -
Dod06g1454 465 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 6 463 - -
Dod06g1454 465 SUPERFAMILY RING/U-box 16 86 - -
Dod06g1454 465 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Dod06g1454 465 MobiDBLite consensus disorder prediction 178 334 - -
Dod06g1454 465 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Dod06g1454 465 SMART ring_2 20 60 IPR001841 -
Dod06g1454 465 MobiDBLite consensus disorder prediction 196 210 - -
Dod06g1454 465 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Dod06g1454 465 MobiDBLite consensus disorder prediction 303 333 - -
Dod06g1454 465 MobiDBLite consensus disorder prediction 81 107 - -
Dod06g1454 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 115 IPR013083 -
Dod06g1454 465 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1454 Dod-Chr6 19427181 19431126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1454 1 387 C3H Transcription Factor Family AT2G30580 32.576 6.93e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1454 K16277 - tcc:18603122 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1454 06 19427181 19431126 Dod06g1454 06 19427181 19431126 ECH