Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1442 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGACACCTGAGGAAGATCAAATCCTCATATCTTTCATCCAAAAATATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGTCTGTTAAGGTGTGGGAAGAGCTGCAGGCTGCGCTGGATTAACTATTTGAGGCCTGATATCAAGAGAGGGAATTTCACTAATGAAGAAGAGGAAACTATCATTAAGCTGCATCAAATGCTGGGGAACAGGTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCATTTGAAGAAGAGGCTCATGAAAACAAACCAACCCAATGATTCAGATACCAAAAGGGTCTCAAGGCCAAAAATAAAGCGTTCTGATTCCAGTTCCAGCACCGTAACTCATTTAGAACCTGCCAATCTTAATTTGCATGAAATGGACACTACATCAGCATGCACTACAACTTCTAGTGATTTTTCATCTGTCACGGTTGGCGAATGCAAGAATATCAAGAGTGAAGACATAGAGTCTCTGGAGACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAAGCAGCAATGGATGAAACCACAACCATGCCATCAGAGTCTTTCGACAATCTCAAATGA 666 0.4294 MVRAPCCEKMGLKKGPWTPEEDQILISFIQKYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEETIIKLHQMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLMKTNQPNDSDTKRVSRPKIKRSDSSSSTVTHLEPANLNLHEMDTTSACTTTSSDFSSVTVGECKNIKSEDIESLETMPEIDESFWSEAAMDETTTMPSESFDNLK* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1442 221 MobiDBLite consensus disorder prediction 117 136 - -
Dod06g1442 221 CDD SANT 69 112 IPR001005 -
Dod06g1442 221 Gene3D - 69 143 - -
Dod06g1442 221 CDD SANT 16 61 IPR001005 -
Dod06g1442 221 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 193 - -
Dod06g1442 221 Gene3D - 13 66 - -
Dod06g1442 221 MobiDBLite consensus disorder prediction 137 152 - -
Dod06g1442 221 SMART sant 13 63 IPR001005 -
Dod06g1442 221 SMART sant 66 114 IPR001005 -
Dod06g1442 221 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 193 - -
Dod06g1442 221 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Dod06g1442 221 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod06g1442 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod06g1442 221 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod06g1442 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod06g1442 221 MobiDBLite consensus disorder prediction 115 152 - -
Dod06g1442 221 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod06g1442 221 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1442 Dod-Chr6 19223222 19225955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1442 1 204 MYB Transcription Factor Family AT2G31180 60.976 6.28e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod06g1442 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1442 K09422 - gmx:100807569 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1442 06 19223222 19225955 Dod06g1442 06 19223222 19225955 ECH