Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1396 ATGAATTCAGAGAAGCAAGTCATGATCAGCTATGAGATCTCAAGTGATGAATCTGACCATCATGAAGAGGCACAAGATGACACTGCCGCAGGAACCAAACGCTCATATGATTGCACATTCTGTAGGAGAGGCTTCACTAATGCTCAGGCTTTAGGGGGTCACATGAATATTCATAGGAAGGACAGAGCAAAGGGCAAGCAAGTCACACCATATTCTTCCTCACTCCAAAACACCAATGATGAGGAACTCATGTCCCTTCCTTTTTCTTCAGAATTTTCAAACCAACTACCCACTAGGAATTACTCCATTTTGGACTCTCAGAGGTAG 327 0.4343 MNSEKQVMISYEISSDESDHHEEAQDDTAAGTKRSYDCTFCRRGFTNAQALGGHMNIHRKDRAKGKQVTPYSSSLQNTNDEELMSLPFSSEFSNQLPTRNYSILDSQR* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1396 108 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Dod06g1396 108 PANTHER OS07G0101800 PROTEIN 13 98 - -
Dod06g1396 108 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Dod06g1396 108 MobiDBLite consensus disorder prediction 14 30 - -
Dod06g1396 108 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 98 - -
Dod06g1396 108 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Dod06g1396 108 MobiDBLite consensus disorder prediction 1 33 - -
Dod06g1396 108 Gene3D Classic Zinc Finger 10 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1396 Dod-Chr6 18643557 18643883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1396 34 88 C2H2 Transcription Factor Family AT3G53820 52.381 9.38e-17 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod06g1396 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1396 - - gmx:102665558 117.857