Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1365 ATGGATCTTGTGAGTAGAAGATACTTGATCTATGTGTCACAACATGATTCACAAGCTCTTTCACCAACAACTAGTCCAGGGAGTTCAATCTTCCACCCTCATGTGCATTCTTCTACCACCAGTTTCCCCATCATAGCAATTGCTATAATAGGAATAATGGCCACAGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAGTGCTGCCTCAATTGGCACCGTATCGATCTCCTGAGACGGTTCTCCCCATCAAGGAGGCGTCAAGATCCATCAGCAGTTTACTCTCCAGGACCAGAACCTCGTGGACTAGATGAAGCAGTGATAAGGCTAATCCCAGTGACAAAATACAAGGCACAACAACAAGAAGGGGATAGAGCTTCTGGAGAAAGAAGCTTCTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAGGATGAGAAGCTGAGGATTATTCCAAATTGCAGCCATGTTTTTCACATTGATTGCATAGATGTTTGGCTTCTGAACAATGCAAATTGCCCTCTTTGCAGAACAAGCATTTCTTTGACTAGCAGGTTCCACATTGATCAGCTTCTCAACAGAAGGCCTTCTTCTCCATCTCATGACCAAACCCCACATGTGGAAAACCTCATTGGTGGTGATGAAGATTTTGTTGTGATTGAATTGGGCAATGACCATGATAGAGGCCAAAATTTGCAAGGAAGGGACAAAGCAATGGAGTTACCAACATGTCCTTTTGTTAGTCCTTCACCAAGGAAGTTAGAGCAGAGAAGTGTGCATAAGAAAGCAAGGAAGCTGCACAAAGTGACAAGCATGGGGGATGAGTGTATTGATACTAGAGCCAAAGATGACCAGTTTTCAGTCCAACCTATAAGGAGGTCTTTCTCAATGGACTCATCAGGGGACAGGCAGTTCTATCTGGCGGTTCAAGAAGCATTGCAGCAGCACAACAGGCAAGTCAATGAGGCTAGCTCCATTGAAGGTTGCAGTGGGAGTGGTAGTAGAGCCAAGAGATCATTCTTTTCATTCGGACATGGGAGTGGTAGATCCAGAAGTTCTGTGCAGCCTGTTTATTTAGAACCTTGA 1089 0.4426 MDLVSRRYLIYVSQHDSQALSPTTSPGSSIFHPHVHSSTTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPSAVYSPGPEPRGLDEAVIRLIPVTKYKAQQQEGDRASGERSFCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLLNNANCPLCRTSISLTSRFHIDQLLNRRPSSPSHDQTPHVENLIGGDEDFVVIELGNDHDRGQNLQGRDKAMELPTCPFVSPSPRKLEQRSVHKKARKLHKVTSMGDECIDTRAKDDQFSVQPIRRSFSMDSSGDRQFYLAVQEALQQHNRQVNEASSIEGCSGSGSRAKRSFFSFGHGSGRSRSSVQPVYLEP* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1365 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 183 IPR013083 -
Dod06g1365 362 PANTHER RING-H2 FINGER PROTEIN ATL16 24 361 IPR044600 GO:0016567|GO:0016740
Dod06g1365 362 MobiDBLite consensus disorder prediction 341 362 - -
Dod06g1365 362 PANTHER RING-H2 FINGER PROTEIN ATL16 24 361 - -
Dod06g1365 362 SUPERFAMILY RING/U-box 120 184 - -
Dod06g1365 362 Pfam Ring finger domain 135 178 IPR001841 -
Dod06g1365 362 SMART ring_2 136 177 IPR001841 -
Dod06g1365 362 CDD RING-H2_PA-TM-RING 135 178 - -
Dod06g1365 362 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1365 Dod-Chr6 18030156 18031953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1365 33 362 C3H Transcription Factor Family AT1G04360 55.182 4.12e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1365 - - gmx:100794749 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1365 06 18030156 18031953 Dod06g1365 06 18030156 18031953 ECH