Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1351 ATGAAGCCAGTGAATATGCAAGAGACATCTAGTGACGAAAGCGATCATCATCAAGATGACCAAGACGACTCCACAAAACGCTCATATGAGTGCACATTCTGCAGGAGGGGCTTCACCAATGCTCAGGCTTTAGGGGGCCACATGAACATTCACAGGAAAGACAAAGCCAACAAGGCCAAGAAATCAGGCACACCCAATTCTTCACTACCAAACAAATACACCAATGAAGAATCCATGCCCTCCCCTTTTATTCCACAATTCTCAAGCCAAACCTCGAATTGTTACACCATTTTTGATCCTCATCAGAGGAACTGTGACATCCGTTTTCAGCCCTCAACAACAACACCTTATAATTATCCTATAAACCCACCTGCATATGCCTTTCAATATGAGTTTCTGAACCCAACTTTGGGGGCAAACCAAGATCTTCTGGGCCCCAACTTGAGTCTCCAAATCGGTCCAAGTCATGTGAATACTGATCAAGTTAGAAGAGGGATTCAGAAAGATGGTGATCATGTTGTGGACTTAGAGCTTAGGCTTGGCCATGATCCATGCTCAAACTACTAA 567 0.4409 MKPVNMQETSSDESDHHQDDQDDSTKRSYECTFCRRGFTNAQALGGHMNIHRKDKANKAKKSGTPNSSLPNKYTNEESMPSPFIPQFSSQTSNCYTIFDPHQRNCDIRFQPSTTTPYNYPINPPAYAFQYEFLNPTLGANQDLLGPNLSLQIGPSHVNTDQVRRGIQKDGDHVVDLELRLGHDPCSNY* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1351 188 PANTHER OS07G0101800 PROTEIN 6 184 - -
Dod06g1351 188 SUPERFAMILY beta-beta-alpha zinc fingers 26 56 IPR036236 -
Dod06g1351 188 MobiDBLite consensus disorder prediction 61 79 - -
Dod06g1351 188 MobiDBLite consensus disorder prediction 45 79 - -
Dod06g1351 188 Gene3D Classic Zinc Finger 6 82 - -
Dod06g1351 188 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Dod06g1351 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Dod06g1351 188 MobiDBLite consensus disorder prediction 1 26 - -
Dod06g1351 188 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 184 - -
Dod06g1351 188 MobiDBLite consensus disorder prediction 9 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1351 Dod-Chr6 17801502 17802068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1351 29 70 C2H2 Transcription Factor Family AT5G43540 69.048 1.56e-16 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod06g1351 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1351 - - lang:109360170 199.519