Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1338 ATGGATTCGGATCAGGGGAAGCTATTCATCGGAGGGATATCGTGGGACACAAATGAAGAGAAGCTGAAGGAGCATTTCAGCAACTACGGCGAGGTCACCAACGCTTCCGTCATGAGGGACAAGAACACCGGCAAGCCCAGAGGCTTCGCTTTCGTCGTCTTCCAAGATCCAAACATTCTCGACGCAGTTCTCCAAGACAAGCACGTCATCGACGGCAGAACGGTTGATGCCAAGAAGGCTTTATCAAGAGAGGATCAGCAAATTTCTGTCTCATCCAGATCTGGAAATTCCAATTCTGGTTGGAATTCTGGAAATGGAGGAAATATGAGGACCAAAAAAATATTCGTTGGAGGGTTGCCTCCCACCCTGACTGAAGAAAAATTCCGCCAGTACTTTGAGTCATTTGGTCATGTGACTGATGTAGTAGTCATGTTCGACCAGAACACTGGACGACCACGCGGATTTGGTTTTATTTCATTCGACTCTGAGGAGGCAGTTGATAGGGTTTTGTACAAGTCATTTCATGATTTAAATGGTAAACAAGTTGAGGTAAAGCGTGCGCTTCCCAAGGACGCCAATCCTGGTTCAGGTGGCCGTATGATGGGTAGTGGTGGTGGCAGGTGGTGGTGCAGGAATTGGTGGTTATCAGGGGTATGGGGCATCTGGTGGGAATCAAAATGCTTATGA 687 0.4774 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGEVTNASVMRDKNTGKPRGFAFVVFQDPNILDAVLQDKHVIDGRTVDAKKALSREDQQISVSSRSGNSNSGWNSGNGGNMRTKKIFVGGLPPTLTEEKFRQYFESFGHVTDVVVMFDQNTGRPRGFGFISFDSEEAVDRVLYKSFHDLNGKQVEVKRALPKDANPGSGGRMMGSGGGRWWCRNWWLSGVWGIWWESKCL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1338 228 SUPERFAMILY RNA-binding domain, RBD 111 208 IPR035979 GO:0003676
Dod06g1338 228 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Dod06g1338 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Dod06g1338 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Dod06g1338 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Dod06g1338 228 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 207 - -
Dod06g1338 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Dod06g1338 228 Gene3D - 4 85 IPR012677 -
Dod06g1338 228 MobiDBLite consensus disorder prediction 84 108 - -
Dod06g1338 228 Gene3D - 86 207 IPR012677 -
Dod06g1338 228 SMART rrm1_1 7 78 IPR000504 GO:0003723
Dod06g1338 228 SMART rrm1_1 113 185 IPR000504 GO:0003723
Dod06g1338 228 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1338 Dod-Chr6 17699486 17701200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1338 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 21.827 2.89e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1338 K14411 - gmx:100811267 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1338 06 17699486 17701200 Dod06g1338 06 17699486 17701200 ECH