Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1337 ATGAGATCCGATGGAAGGCTGCGCTTCGAACAAGAGAGGACAAATCTGAGTCGCCGGCCGATTTCGCGCTTCAGCTTCGCCGCCTGGGTCATGGCCTCGTGGGTGGGGGTGCGAGTGACTGTGTGTAGCAAATCCAACGCCACCATGGTTGCTTCTTGCTACCGCCATGGAAAAATTGGTAGAGGAAATGGAGGTCTTGTGGTTGTGGACGAGCTGTGCAGTGTTATAGAGGTTGTTGGCACAACTTATGTTTTCGGGAAGCACGGAGGTGACCCTTGCGGTGGTGATTGTGGTTGGGAATGGCGGAAGTGGTGGTGGTCGTGGTTATGGATAGCAGAAAAGGAGGAGGAGGAGGGGAAGCTATTCATCGGAGGGATATCGTGGGACACAAATGAAGAGAAGCTGAAGGAGCATTTCAGCAACTACGGCGAGGTCACCAACGCTTCCGTCATGAGGGACAAGAACACCGGCAAGCCCAGAGGCTTCGCTTTCGTCGTCTTCCAAGATCCAAACATTCTCGACGCAGTTCTCCAAGACAAGCACGTCATCGACGGCAGAACGGTTGATGCCAAGAGGGCTTTATCAAGAGAGGATCAGCAAATTTCTGTCTCATCCAGATCTGGAAATTCCAATTCTGGTTGGAATTCTGGAAATGGAGGAAATATGAGGACCAAAAAAATATTCGTTGGAGGGTTGCCTCCCACCCTGACTGAAGAAAAATTCCGCCAGTACTTTGAGTCATTTGGTCATGTGACTGATGTAGTAGTCATGTTCGACCAGAACACTGGACGACCACGCGGATTTGGTTTTATTTCATTCGACTCTGAGGAGGCAGTTGATAGGGTTTTGCACAAGTCATTTCATGATTTAAATGGTAAACAAGTTGAGGTAAAGCGTGCGCTTCCCAAGGACGCCAATCCTGGTTCAAGTGGCCGTATGATGGGTAGTGGTGGTGCAGGAATTGGTGGTTATCAGGGGTATGGGGCATCTGGTGGCAATCAAAATGCTTATGATGGTCGTATGGATTCTAGTAGATATATGCAGCCTCAAAGCAGTGCTGGTGGATTTCCACCTTATGGTTCTTCTGGCTACAATGCTCCTGGGTATGGGTATGGTCCGGCTAATAATGGGATGGGTTATGGTGCATACGGAAGTTATGGAGGTGCCGCTGCTGGGTATGGTGGAGCTGCTGGTGCAGCATACGGGAATCCAAATGTTGCTAATGCTGCTTATGCTGCTGGTCCACCAGGTGGCCCAAGGAGTACATGGCCTGCTCAGGCTCCCGCTGGTTATGGGTCTATGGGCTATGGGAACACTGCTGCTTGGGGTGCTCCAAGTGGGGGTGCTGGGTCCGGGGTTGGGGGCCCTGGTTCAGCCACTGCAGGTCAATCCCCTAGTGGAGCTGCTGTATATGGGAATCAAGGATATGGATATGGTGGTTATGGTGGAGGCGATAGTTCTTATGGGAATCCAGGTGCATATGGTGCTGTTGGAGGGCGTACTGGGAGTGCCCCAAATAGTAATGCTAGTGGTCCTGGTGGCAGTGAATTACAAGGTAGTGGTGGCAGTGGCAGCTATATGGGCAGTGGCTATGGTGATGCTAATGGAAATTCTGGTTATGGAAATGCAGGCTGGAGATCTGAGCAAGCTCAAGCATCTGGAAATTATGGGACTCCTCAGGGATCTCATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTTGA 1737 0.5107 MRSDGRLRFEQERTNLSRRPISRFSFAAWVMASWVGVRVTVCSKSNATMVASCYRHGKIGRGNGGLVVVDELCSVIEVVGTTYVFGKHGGDPCGGDCGWEWRKWWWSWLWIAEKEEEEGKLFIGGISWDTNEEKLKEHFSNYGEVTNASVMRDKNTGKPRGFAFVVFQDPNILDAVLQDKHVIDGRTVDAKRALSREDQQISVSSRSGNSNSGWNSGNGGNMRTKKIFVGGLPPTLTEEKFRQYFESFGHVTDVVVMFDQNTGRPRGFGFISFDSEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGSSGRMMGSGGAGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSSAGGFPPYGSSGYNAPGYGYGPANNGMGYGAYGSYGGAAAGYGGAAGAAYGNPNVANAAYAAGPPGGPRSTWPAQAPAGYGSMGYGNTAAWGAPSGGAGSGVGGPGSATAGQSPSGAAVYGNQGYGYGGYGGGDSSYGNPGAYGAVGGRTGSAPNSNASGPGGSELQGSGGSGSYMGSGYGDANGNSGYGNAGWRSEQAQASGNYGTPQGSHGGQVGYGGGYGGAQS* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1337 578 Gene3D - 111 205 IPR012677 -
Dod06g1337 578 Gene3D - 221 342 IPR012677 -
Dod06g1337 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 302 IPR000504 GO:0003723
Dod06g1337 578 MobiDBLite consensus disorder prediction 504 578 - -
Dod06g1337 578 MobiDBLite consensus disorder prediction 197 220 - -
Dod06g1337 578 SUPERFAMILY RNA-binding domain, RBD 224 332 IPR035979 GO:0003676
Dod06g1337 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 188 IPR000504 GO:0003723
Dod06g1337 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 293 IPR000504 GO:0003723
Dod06g1337 578 CDD RRM1_hnRNPA_hnRNPD_like 121 191 - -
Dod06g1337 578 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 116 577 - -
Dod06g1337 578 CDD RRM2_DAZAP1 223 302 IPR034131 GO:0003723
Dod06g1337 578 SMART rrm1_1 120 191 IPR000504 GO:0003723
Dod06g1337 578 SMART rrm1_1 226 298 IPR000504 GO:0003723
Dod06g1337 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 195 IPR000504 GO:0003723
Dod06g1337 578 MobiDBLite consensus disorder prediction 504 562 - -
Dod06g1337 578 SUPERFAMILY RNA-binding domain, RBD 103 223 IPR035979 GO:0003676
Dod06g1337 578 MobiDBLite consensus disorder prediction 195 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1337 Dod-Chr6 17689408 17695273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1337 121 313 Eukaryotic Initiation Factors Gene Family AT2G23350 20.192 3.87e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1337 K14411 - gmx:100811267 560.066