Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1311 ATGGAGCAGGAAGAGCACGAAGTGTACGGTGCGGACATTCCCGACGATGAGGCCGACATGGAGGCCGACGCCGACCTCCACGAACACGAACACGACCACGACCAAGACCAAGAACACCATCCCTCCTCTCACCCTAACAAGGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAAGAAGCCAGCGCCCTCCGCGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATGCATCTGGCTCTTCTGCAAGTCAAGCTGAAAAGGAAGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGTACGCCTGAAGAAGTTCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTGACAATATTGACCGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATATTCCTGGAATGAAACAGTATTTTGGAAGAAGACCTACTGGTTTCCGATCGAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATACTTATGGAAGGGTCCCAAGGTTTAGACGACCTACTCGATACAGGCCATACTAG 672 0.4762 MEQEEHEVYGADIPDDEADMEADADLHEHEHDHDQDQEHHPSSHPNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDASGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQYFGRRPTGFRSRRPFMPSPFYPPYTYGRVPRFRRPTRYRPY* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1311 223 Gene3D - 15 179 IPR012677 -
Dod06g1311 223 SUPERFAMILY RNA-binding domain, RBD 89 197 IPR035979 GO:0003676
Dod06g1311 223 SMART rrm1_1 100 171 IPR000504 GO:0003723
Dod06g1311 223 MobiDBLite consensus disorder prediction 1 96 - -
Dod06g1311 223 Coils Coil 46 76 - -
Dod06g1311 223 CDD RRM_II_PABPs 100 171 - -
Dod06g1311 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Dod06g1311 223 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 222 - -
Dod06g1311 223 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 222 - -
Dod06g1311 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 175 IPR000504 GO:0003723
Dod06g1311 223 MobiDBLite consensus disorder prediction 24 75 - -
Dod06g1311 223 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1311 Dod-Chr6 17446172 17451033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1311 100 171 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 6.74e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1311 K14396 - gmx:100527545 326.25