Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1307 ATGGCGGATGCGCCGACGAGCCCGACGGGCGGGAGTCACGAGAGCGGCGGGGAGCAGAGCCCGCGGGGTTCATCTTCCGGCGGCGGCGGAGGAGGAGGGGCGAGGGAGCAGGACAGGTTCCTGCCGATCGCGAACATCAGCAGGATCATGAAGAAGGCGCTGCCTGCCAACGGCAAGATCGCCAAGGACGCCAAGGACACCATGCAGGAATGCGTCTCGGAATTCATCAGTTTCATCACCAGCGAGTCAGAACAACACCACTACCAAACAAATTTACATTCTCAATTTTTTTTTTCCTCTTTCTCAGTTCACGTGAATAATGTTGGTCAAATTAGTCATTTTTTTTCACTATAA 354 0.5395 MADAPTSPTGGSHESGGEQSPRGSSSGGGGGGGAREQDRFLPIANISRIMKKALPANGKIAKDAKDTMQECVSEFISFITSESEQHHYQTNLHSQFFFSSFSVHVNNVGQISHFFSL* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1307 117 SUPERFAMILY Histone-fold 26 86 IPR009072 GO:0046982
Dod06g1307 117 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 85 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod06g1307 117 Gene3D Histone, subunit A 32 91 IPR009072 GO:0046982
Dod06g1307 117 MobiDBLite consensus disorder prediction 1 26 - -
Dod06g1307 117 MobiDBLite consensus disorder prediction 1 39 - -
Dod06g1307 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 85 IPR003958 -
Dod06g1307 117 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1307 Dod-Chr6 17360063 17363998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1307 1 83 CCAAT-HAP3 Transcription Factor Family AT2G38880 66.265 1.49e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod06g1307 CBFD_NFYB_HMF 1.1e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1307 K08065 - zju:107409505 110.153