Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1288 ATGGAGGATACACTTCCCAAGATGGAAATCTTCACCCAAAAGGAATTGCCAACTTGTTTGCAAGAAATGGCAGTGGGATCAAAGATTCTGGGCAATGCAATTATAAGAGGTTCTCACACTCTCACTGCTTCTCATTACCTTCCTGCATTAAGAAGTGGGGTAAATTCATCATCAATAGCAGCATCAACTGAAAGGCTTCTTTTATGTTCGGATTCTGCTTCAATGAAAGAAGAGGTACCCTTTGGCACTTCGATTAGTCATCTCCCTTCAAAGTTCTATGGCCATGAAGACCTCAAAAATGGGCTAGAGAAAAATCAGTCCTTTTCGAGATTCAATTCTATAGGCACTCCTGGTGCCTCAGCCTCAGACACAAAACATGGATCTGTTCCTCTAAACCTCTTGGAAACTCTCCCAGCATTAACCATAGCACCAATTTCTGACGATTCAGCAGCTTCTTTGGCTCCTTCTTCTTCTTCTTCTGCTACACACAAATTCCCAAACTTGACCTTGTTTTTGCAGGAACCTTCCATGCTATACTCATCATCCTCACAAAGCAAAACTTGTGAAGCCATGTCAGCAACCTCAGACCCCACATTTCCTGTGTCCCAGTTTGGCCTAACCAACCACCGAGCAGGCACTGATTCACTCAAACTCAATAAGAATCTAACAAAGTGCAAGTCTTTCAATGAGAATTGGTTGAGCGCAACTAGGACTCAGCCTTTGAAGTTTGGTGGCAGTGGAAGAGGCAAGCTTTTCAAAGGGGTGAGGCAAAGACAATGGGGGAAATGGGTTGCTGAGATCAGATTACCAAGAAATAGGACAAGGGTATGGCTAGGGACTTTCGACACAGCTGAAGATGCAGCCATTGCATATGACACAGCAGCATACATACTAAGGGGAGAGTATGCTCAGTTGAATTTTCCAGATATGAAGCATGTGATCAAGGCCAATTCAATGAATGGAACCACTGCTGCACTTGTTGAGGCAAAACTACAGGCAATATCAAAGCGTGTTTGTTCTCATAGGAAGCCTAATAGTAATGATTCACAAGCAGTGTCAGTGTCACCACCAAGTAGTAATAAGCACACTGATGAGGATGGCAAATTGAGGAGTAAAAATAATATGAAGGATTCAGCATTAATGGAGTGGAAGTTTGATATAGGGGGAAAGGTTGAAAATGAGACAACAACTGAGAGAAGCAAGAGTGCACATCATGAGATGTTGGATGGGGAAGGTGTTCAGTTGAGTAGAATGCCATCCTTGGACATGGACATAATTTGGGATGCACTTTCATTCTCTGATTCATGA 1308 0.4289 MEDTLPKMEIFTQKELPTCLQEMAVGSKILGNAIIRGSHTLTASHYLPALRSGVNSSSIAASTERLLLCSDSASMKEEVPFGTSISHLPSKFYGHEDLKNGLEKNQSFSRFNSIGTPGASASDTKHGSVPLNLLETLPALTIAPISDDSAASLAPSSSSSATHKFPNLTLFLQEPSMLYSSSSQSKTCEAMSATSDPTFPVSQFGLTNHRAGTDSLKLNKNLTKCKSFNENWLSATRTQPLKFGGSGRGKLFKGVRQRQWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDMKHVIKANSMNGTTAALVEAKLQAISKRVCSHRKPNSNDSQAVSVSPPSSNKHTDEDGKLRSKNNMKDSALMEWKFDIGGKVENETTTERSKSAHHEMLDGEGVQLSRMPSLDMDIIWDALSFSDS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1288 435 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 434 - -
Dod06g1288 435 Pfam AP2 domain 252 300 IPR001471 GO:0003700|GO:0006355
Dod06g1288 435 Gene3D AP2/ERF domain 251 309 IPR036955 GO:0003700|GO:0006355
Dod06g1288 435 SMART rav1_2 251 314 IPR001471 GO:0003700|GO:0006355
Dod06g1288 435 MobiDBLite consensus disorder prediction 340 373 - -
Dod06g1288 435 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 9 434 - -
Dod06g1288 435 MobiDBLite consensus disorder prediction 344 360 - -
Dod06g1288 435 SUPERFAMILY DNA-binding domain 251 309 IPR016177 GO:0003677
Dod06g1288 435 CDD AP2 250 309 IPR001471 GO:0003700|GO:0006355
Dod06g1288 435 PRINTS Ethylene responsive element binding protein signature 274 290 IPR001471 GO:0003700|GO:0006355
Dod06g1288 435 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Dod06g1288 435 ProSiteProfiles AP2/ERF domain profile. 251 308 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1288 Dod-Chr6 17105217 17106864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1288 127 435 AP2-EREBP Transcription Factor Family AT4G13620 43.849 2.13e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod06g1288 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1288 - - gmx:100820013 511.531