Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1272 ATGACAACAGCACAAGAAGCTTCAACTATAGAACTGTTGCGCCAGCATCTCTTAGGTGGTGATATCTCAGACTCCTTCCTCACCAATCTCATCCCTGTGAAACTTGAACAACAAGACCCTTTACCATCATCACCAGAACTTGTTGATTTTGATCCATATTTCTCAGGACAGGGCAGCTTCTGTGCTTTACTTGAAAGCTCTACTAGTTATTATGAAGCTGATGCAGCAGAAGAAGAAGTTGTTGATCTCAATTACTCTCTAAATGATGTCCAAAACCACTCCAATAATGTTGTAGAGAGTCCCTTATTAGAGGAAATAACCAAGGAGGAGGAGTCCAATATGCCAGACATATTACCAGTGGTGTCATCATCATCAGGGAGGAAAAAGAAGGCATGTGAGAAGGGAATTAGGCACTATAGAGGGGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCAGAGATCAGAGACCCTACAAGGAAAGGGTCAAGGGTGTGGCTAGGCACATTTGACAGTGAGATTGATGCTGCTAAGGCTTATGATTGTGCTGCTTTCAGGATGAGGGGTCAGAAAGCCATCTTGAATTTCCCTCTTGAGGCTGGAGAGTCTGAGTCTGAGCCCAAGCCCAACATTTCTGGCACGAAAAGAAGAAGAGATTAA 657 0.4444 MTTAQEASTIELLRQHLLGGDISDSFLTNLIPVKLEQQDPLPSSPELVDFDPYFSGQGSFCALLESSTSYYEADAAEEEVVDLNYSLNDVQNHSNNVVESPLLEEITKEEESNMPDILPVVSSSSGRKKKACEKGIRHYRGVRRRPWGKFAAEIRDPTRKGSRVWLGTFDSEIDAAKAYDCAAFRMRGQKAILNFPLEAGESESEPKPNISGTKRRRD* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1272 218 Coils Coil 73 93 - -
Dod06g1272 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 217 - -
Dod06g1272 218 CDD AP2 138 196 IPR001471 GO:0003700|GO:0006355
Dod06g1272 218 SUPERFAMILY DNA-binding domain 138 197 IPR016177 GO:0003677
Dod06g1272 218 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700|GO:0006355
Dod06g1272 218 Gene3D AP2/ERF domain 137 198 IPR036955 GO:0003700|GO:0006355
Dod06g1272 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 217 - -
Dod06g1272 218 Pfam AP2 domain 138 188 IPR001471 GO:0003700|GO:0006355
Dod06g1272 218 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Dod06g1272 218 PRINTS Ethylene responsive element binding protein signature 178 198 IPR001471 GO:0003700|GO:0006355
Dod06g1272 218 MobiDBLite consensus disorder prediction 196 218 - -
Dod06g1272 218 SMART rav1_2 138 202 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1272 Dod-Chr6 16941303 16943909 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1272 137 217 AP2-EREBP Transcription Factor Family AT5G07580 72.840 4.85e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod06g1272 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1272 - - ccaj:109813158 207.223