Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1250 ATGGCAGGAAACTTCAGATTCACAATGGACCAGAAGGATATTGTTAGATTCTTGACCACTACTATTGATAGTTTCATTCAGGATAGGTTAATCAACAAAGAACAAAGAACTCAACACAAAGAACAGTGTGCTGAGAGGTTAGCAGCTGAAGATGGAAGTAGTGACAAAGACACTGAGGTAGAGTACTCTGATCAAGCAGTACTAGCAAACCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTACAACATGGAAACTAAGCTTGCAAGACTAGATTATGCTGAGAAGATGTTGCAAGTGTGTGCTATGTTGAATCCTAAGCAGAAAACTGCTGGAGTGCCAAACTTCTACCTCTCAGCTTGGGCACACCTAAATCTAGCCTACTTATGGAAGTTGAGGAACAACATTCAAAACTGTATTCTTCATGCTTTTGAGATGTTCATTGTTGATCCTTTTTTCGCTCGGATTGACTTTGCTCCGGAACTATGGAAAAATCTTCTTCTTCCACACATGAGCTCCATTGTAGGGTGGTATTCAGAGGAGAGGCACAGGCTTATGATGGAAGTGATACCTGAAACTTCTGATATGTCCTTTACAGCTGACCTTGATCAACTCTTCAATGAGTCATTGGTATTTTCTATGAGGCCAAATCAATTAGATAAGTTGCAAAAGCTGGAGCAGCTTTATGGAGAGTCGTTGGATGAGAACACACGGCTATATGCAAAGTACTATAAGGATTGCATGAACTCTGATTCCTCCTCAGGCAAGAAGGTGGTGCCCATGTTGCCAATTGCTGAGCCCCCAATGACTCCTTTGCATGAGTTGAGCAGGTCCATTCCTGATTATGTAAAGTTTGGTCCTATTTTGCCCAAGAGTGCTGGCTTTTCTTTGATGTCAAGACCCAAAGATGGTGTAAATGAGAAGTCCAGAGAAAAGCTTTCCAGCCATTCCAAGGTGGAGAATTCATCAATGTGGGGTGCTAAGGAGAGCATCATTGAAGAGAATGAAGATGAATCAGATTCTGAACTTGATGATGCATCTGTGGATTCTGATAAGAAAATAAATATATTCTCATCTGAAATGAAGGCGATCAAGGATGATGATATCGAGACAAAAGTGCATATATCAAGCCAGAAGAATCAAATGTATTCTAATATCTCCCCTCCCTTGGACTCTCCAAGAATTGCACAAAATAATTCATTTACAAAACGTGATTCACGTAGCAGAAGAGAATCGAAGTATTTGCATTTATTGTCTAGTCGTTTAAGGGACTCGACTATTTCTGACTCTTTATCGCCATCTCCAGACATGAGTGCTGATCACATTTACAACTCTGATAACGAAATGATGGCCTTGAAGAATATTAAGAGGACAAACTATAACCAACTGCTACGAATGAATCATGAAAATGAGGATAGCCCGGTGCTAAATGACAGTTCCTTTTGTGAAAGTGAAGAGGGATATCATGGCTGCATTTCATTGCCAAAATTAGAGAAGAAGACTAATGGATCGAAACCGCCCAAAGATTTCGTATGCCCAATCACAGGTCAGATATTTTGTGATCCAGTTACTCTTGAAACAGGCCAGACCTACGAAAGAAAAGCAATCCAAGAGTGGCTCAAAACAGGAAACCCCACATGCCCCATCACACGACAGCCACTATCCGCAAGCTCTTTACCCAAAACTAACTATGTTTTGAAGAGACTCATAACATCATGGAAAGAACAACATCCTGAACTAGCTCAGGAGTTCTCGAATTCTAACACACCAAGGGCTTCTTCCCATTCTCCCTCCGCAAAAGACACCTCCATGCTCTCTATTCTACAAAGATCACCAGACTTAGCAACTCATAAGAGCAAAGAAGATCATATTACACAAAGGAGCAAAAGATTTACTCTGGTCGCTGCAACATCTCCAACTAGTGTTCTATCTCAAGTTGTAGTTGAAACAATTATGACTTCCCTGAAACCGTACATCTCAAGTCTTTGTACATCAGAAAACTTACAAGAATGTGAAGAAGCTGTACTGGAAATTGCTAGATTATGGAAGGATTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAGCCAACTATCATAAATGGTTTAGTGGAAATACTTTCAGCTTCAGCGAATAGAGAAGTTCTGAGGACATCAATTTATATTCTTTCTGAGCTAATTTTTGTAGATGAAAGTGTTGGAGAAACACTCAACAGTGTAGATTCTGATTTCGATTGTTTGGCTACTCTACTTAAGAATGGTTTGGATGAAGCTGCTCTTCTTATTTATCAACTAAGGCCAGTTTTTGCTCAGCTTTCAGCCCATGAACTTATACCCTCTCTCGTCCAGGTGATCCAGGACAAAAATGAGGAACTAGATGATTTTCAGTTAGTTGTTGACCCCAAAGATGCCGCCTTAGCGATTCTTGAGCAGATTTTAACAGGAGGGGATGAATACAGCAGGTCCCTTAGTGCTTTGAGTGTTGTTTCAGCAAATGGAATTCCAGCCTTATTAAAGTATTTGGAGAGGATGGAAGGAAGGAGGTCTGTTGTTTCAATACTTTTGTGTTGTATGCAAGCTGAAAAGAGCTGCAAGAGCTTGATAGCAAAGAGAATTGAATTATCTCCTGTTCTTGAATTATTTCATGCTGGAAATGATAGTGTGAGAGGCATCTGTGTGGAGTTTCTCTCAGAACTGGTTCAATTGAATAGGAGAACTTTCTGCAACCAAATATTACAGAATATCAAGGATGAAGGAGCATTCAGTACGATGCATACATTTCTTGTATATCTTCAGATGGCACCAATGGAGCATCAACTAGCTGTTGCCAGTCTTCTTCTTCAACTTGACCTTCTGGTCGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATTGAAGCACTTTGGCAAAAGGACTTCTCAAATGCTCAAATGAGGGCTTTAGATGCTTTGCTACTTCTTACCGGAAATGTCACTTCCTCAGGAATGTCATATACTGAAGCTTGGTTGCTCAAGATTGCAGGATTTGATCATCCTTACAACGCTTTAATGAAGCCTGAGCAGTTGGGACAATATGACAATGATTTGGTGGAAACAATGGAGGATGAAAAAAATGCCATCAACTCTTGGCAGAAAAGGGTAGCCTTTGTACTTTGCAACCATGAAAATGGTTCAATATTTAAAGCTTTGGAGGAATGCTTAAGGAGTACTTCCTTAGAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCGCACACATGCTCTCTACCCTTCCTGACACCGGTGTCCGGGACATTGCTCGCAAATCCTTGCTTGACATACTCATAAATGTCCTCCAGTCATCCAAGAACCTGGAGGAAAAGATCCTCGCCACCCTTGCTTTGAATACTTTCATTAATGATCCAATTGCTCATGAAGCACTTGGAGTTTATGCCAAAAGCATCTATAGAACCTTGAGGAAGCTGAAGAAATACTCAGCTGTGCCAATTGATATTATGAAAGCCTTACTAAACTTAGAATCTGTTGATATGACTGAGTTGTGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTAAGCTCAAATGGAGAGGTCCTTTCTTTGCTTTATCTGAAAGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTTTGGGATGCAAGGAAAAGAATACCAAGAGTGATTCAAGAAACTCGTGAGCACACAAAAGCCATAACGTCTCTGTGTTCTTCGGGCGATAGACTATACAGTGGCTCCTTAGACAAAACCATCCGGGTCTGGACTATTAAATCTGATGAGATTAGATGTATAGATGTCCATGATGTTAAGGAGGCAGTGTATGAGTTGACAGCTAATGCTAAATTGGCATGCTATGTGTCTCAAGGAACTGGAGCCAAGGTTTATAACTGGTCAGAGGCTCCAAAGCATATCAACTTCAACAAATATGTCAAATGCCTTGCTGTTGCTGGGGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATTCAGGAGGTTGACCTGTCCACATATACATCGAATTCATTCTTCTCTGGTACAAGAAAATTGTTGGGGAAACAAACCATACACTCCCTTCAAATCCATGATGGTTTCCTCCTTGCTTGTGGTTCTTCTGTTGATGGAATTGCAGGAAAGATATTTTCACTTGCCACCAAAATGGTGGTAGGATCACTCTCAACTGGAATGGATATCCATCGCATAGCCGTCAACAGTGACTTCATATTTGCTGGCACAAAATTTGGCACCATTGAGGTTTGGCTAAAAGACAAGTTCACCCGGGTTGCCTCCATCAAAATGGCAGGTGGTAACACAAAGATCACAACATTAGTATCAGATGCCGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTGGACTAG 4452 0.4095 MAGNFRFTMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKEQCAERLAAEDGSSDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNFYLSAWAHLNLAYLWKLRNNIQNCILHAFEMFIVDPFFARIDFAPELWKNLLLPHMSSIVGWYSEERHRLMMEVIPETSDMSFTADLDQLFNESLVFSMRPNQLDKLQKLEQLYGESLDENTRLYAKYYKDCMNSDSSSGKKVVPMLPIAEPPMTPLHELSRSIPDYVKFGPILPKSAGFSLMSRPKDGVNEKSREKLSSHSKVENSSMWGAKESIIEENEDESDSELDDASVDSDKKINIFSSEMKAIKDDDIETKVHISSQKNQMYSNISPPLDSPRIAQNNSFTKRDSRSRRESKYLHLLSSRLRDSTISDSLSPSPDMSADHIYNSDNEMMALKNIKRTNYNQLLRMNHENEDSPVLNDSSFCESEEGYHGCISLPKLEKKTNGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNPTCPITRQPLSASSLPKTNYVLKRLITSWKEQHPELAQEFSNSNTPRASSHSPSAKDTSMLSILQRSPDLATHKSKEDHITQRSKRFTLVAATSPTSVLSQVVVETIMTSLKPYISSLCTSENLQECEEAVLEIARLWKDSKTDPQIHSYLSKPTIINGLVEILSASANREVLRTSIYILSELIFVDESVGETLNSVDSDFDCLATLLKNGLDEAALLIYQLRPVFAQLSAHELIPSLVQVIQDKNEELDDFQLVVDPKDAALAILEQILTGGDEYSRSLSALSVVSANGIPALLKYLERMEGRRSVVSILLCCMQAEKSCKSLIAKRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTFCNQILQNIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNAQMRALDALLLLTGNVTSSGMSYTEAWLLKIAGFDHPYNALMKPEQLGQYDNDLVETMEDEKNAINSWQKRVAFVLCNHENGSIFKALEECLRSTSLEMAKSCLVLATWLAHMLSTLPDTGVRDIARKSLLDILINVLQSSKNLEEKILATLALNTFINDPIAHEALGVYAKSIYRTLRKLKKYSAVPIDIMKALLNLESVDMTELWSCKEVVELDLSSNGEVLSLLYLKGQVLSGHSDGTIKVWDARKRIPRVIQETREHTKAITSLCSSGDRLYSGSLDKTIRVWTIKSDEIRCIDVHDVKEAVYELTANAKLACYVSQGTGAKVYNWSEAPKHINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSTYTSNSFFSGTRKLLGKQTIHSLQIHDGFLLACGSSVDGIAGKIFSLATKMVVGSLSTGMDIHRIAVNSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITTLVSDADGMMLFVGSSDGKIQVWALD* 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1250 1483 MobiDBLite consensus disorder prediction 306 320 - -
Dod06g1250 1483 PRINTS G protein beta WD-40 repeat signature 1468 1482 IPR020472 -
Dod06g1250 1483 PRINTS G protein beta WD-40 repeat signature 1259 1273 IPR020472 -
Dod06g1250 1483 PRINTS G protein beta WD-40 repeat signature 1217 1231 IPR020472 -
Dod06g1250 1483 MobiDBLite consensus disorder prediction 385 405 - -
Dod06g1250 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1242 1277 IPR001680 GO:0005515
Dod06g1250 1483 CDD RING-Ubox_PUB 513 555 IPR045210 -
Dod06g1250 1483 SUPERFAMILY RING/U-box 508 581 - -
Dod06g1250 1483 Gene3D - 1182 1483 IPR015943 GO:0005515
Dod06g1250 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1449 1483 - -
Dod06g1250 1483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1483 - -
Dod06g1250 1483 SUPERFAMILY WD40 repeat-like 1216 1482 IPR036322 GO:0005515
Dod06g1250 1483 MobiDBLite consensus disorder prediction 385 412 - -
Dod06g1250 1483 SUPERFAMILY ARM repeat 662 1144 IPR016024 -
Dod06g1250 1483 Pfam WD domain, G-beta repeat 1212 1230 IPR001680 GO:0005515
Dod06g1250 1483 Pfam WD domain, G-beta repeat 1241 1271 IPR001680 GO:0005515
Dod06g1250 1483 SMART WD40_4 1440 1481 IPR001680 GO:0005515
Dod06g1250 1483 SMART WD40_4 1235 1272 IPR001680 GO:0005515
Dod06g1250 1483 SMART WD40_4 1192 1230 IPR001680 GO:0005515
Dod06g1250 1483 ProSiteProfiles U-box domain profile. 508 583 IPR003613 GO:0004842|GO:0016567
Dod06g1250 1483 Gene3D - 656 934 IPR011989 -
Dod06g1250 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1449 1483 IPR001680 GO:0005515
Dod06g1250 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1242 1277 - -
Dod06g1250 1483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1483 - -
Dod06g1250 1483 MobiDBLite consensus disorder prediction 299 330 - -
Dod06g1250 1483 Pfam U-box domain 510 580 IPR003613 GO:0004842|GO:0016567
Dod06g1250 1483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 592 IPR013083 -
Dod06g1250 1483 SMART Ubox_2 512 576 IPR003613 GO:0004842|GO:0016567
Dod06g1250 1483 MobiDBLite consensus disorder prediction 583 607 - -
Dod06g1250 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1217 1230 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1250 Dod-Chr6 16569873 16576928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1250 502 900 U-box Gene Family AT1G23030 24.638 1.11e-18 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1250 - - gmx:100776142 2454.48