Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod06g1241 | ATGGGTGCTGTTGTGCTTGCGATGTCCGAACGCTTAGTCCATGACTTTGTGCTTAGAAGAAAAATAAGAAAAGTTCCAATAGCAGGTCCAATTACATTGAAAAATGGTCGCAAAGCTAATGTAGCTGATTTCCTAGTTATAAAGGTGGCCGATCAACCCCACAAACCGGATGTTGATGTTAAAGGAAGAGAGAATGTTGTGGGACTGGAATGTCCAATATGCTCCAAAGATTTTGGTGGTACTGATGAACCAAGTCTGATGGTTGTTCCGAAATGTTTCCACATTTGCCATACAAAATGCTTTAATAAGAAGTTTAGGCACAAAAAGACTTGTCCTAGTTGTGATGGTGTGGTGGAAGTGAAGGATATCAAGGAGGTTAAAATTACTAGTAAACCCTACAATTGCTAG | 408 | 0.3995 | MGAVVLAMSERLVHDFVLRRKIRKVPIAGPITLKNGRKANVADFLVIKVADQPHKPDVDVKGRENVVGLECPICSKDFGGTDEPSLMVVPKCFHICHTKCFNKKFRHKKTCPSCDGVVEVKDIKEVKITSKPYNC* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod06g1241 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 134 | IPR013083 | - | |
| Dod06g1241 | 135 | Pfam | Ring finger domain | 70 | 114 | IPR001841 | - | |
| Dod06g1241 | 135 | SUPERFAMILY | RING/U-box | 70 | 120 | - | - | |
| Dod06g1241 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 71 | 115 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod06g1241 | 68 | 122 | C3H Transcription Factor Family | AT2G20030 | 36.364 | 6.14e-06 | 42.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod06g1241 | - | K11982 | itr:116017381 | 50.447 |