Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1236 ATGAATCAGCATGAATTGTTTGGAAGAACAGGCTTTGCCCTCTTGTTCTTCCTCGGCCTTATCATCCTTACTCTTCTTCTTACACTTGCTTCTTATTTGTGCACTATTCTTCCCAATGCTTCCACTCCATCTAACAGTGTCAGTGGTGACACTGCCACAAATTCCAACCTCATGACAATCACTGTCGAATCTTCTGAGCCACGTTTGGATCAGAGTGCTACATGGTGCAGCTATCCAAGTCTGTTATACTCCAAGAGCAAATTGGGTGGTGGTAGCAGCTCAAGTTGTTCTTGTTGCTCCATATGCTTGATGGATTATAAAGAATCTGATTTACTTAGAATGCTACCTGGATGTGATCATTTCTTCCATGTCAAGTGTGTAGATCCTTGGTTGAGAATGAATTTGACCTGCCCCATTTGTAGGAAGAAACCACAGGCCCAAATAAATTAA 450 0.42 MNQHELFGRTGFALLFFLGLIILTLLLTLASYLCTILPNASTPSNSVSGDTATNSNLMTITVESSEPRLDQSATWCSYPSLLYSKSKLGGGSSSSCSCCSICLMDYKESDLLRMLPGCDHFFHVKCVDPWLRMNLTCPICRKKPQAQIN* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1236 149 SMART ring_2 99 140 IPR001841 -
Dod06g1236 149 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Dod06g1236 149 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 146 - -
Dod06g1236 149 CDD RING-H2_PA-TM-RING 101 141 - -
Dod06g1236 149 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 146 IPR045899 -
Dod06g1236 149 SUPERFAMILY RING/U-box 98 145 - -
Dod06g1236 149 Pfam Ring finger domain 99 141 IPR001841 -
Dod06g1236 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1236 Dod-Chr6 16473518 16473967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1236 7 144 C3H Transcription Factor Family AT2G35910 39.855 2.28e-25 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1236 - - mtr:MTR_1g090440 117.857