Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1235 ATGCCTTATTCCAATTATTCCACCTTGCAACCCAACAACAACAACAACAACAATAGCAGTAGTGGTTTTGATGCAAGTGGATTCACATATGGCATAGCATTCGTAGTTGGCTTGATCTTCTTGCTAGTCGCAATAGCTTTTGCATGTGTGCGCCTTCGTTTGACTGAGAGCCCCAACATACACAATATGTTGTCTGGTTTTCCACGATCTCAAGTGGAACACTACATAGCTGAGGCCATGGAAGAGGGCCTTGGCAATCATCATCATCATGTTCATATTGACACAAGTTTCCAAAGCTACCCCAAGTTTCTATACTCTGAAGAAAACGAGAAGAAAGGTGGATCATCAGGGGTTTCTTCTGTATGCTCCATATGCTTAGGGGATTACAAGGAAAGTGACATGTTGAGGATGCTTCCTGATTGTGGCCACGTGTACCACCAAGCCTGTGTTGATCCATGGCTCATGTTACACTCCACCTGCCCCATATGTCGAAAATCATCGGTTCAAGCTTCACAGTAG 519 0.4432 MPYSNYSTLQPNNNNNNNSSSGFDASGFTYGIAFVVGLIFLLVAIAFACVRLRLTESPNIHNMLSGFPRSQVEHYIAEAMEEGLGNHHHHVHIDTSFQSYPKFLYSEENEKKGGSSGVSSVCSICLGDYKESDMLRMLPDCGHVYHQACVDPWLMLHSTCPICRKSSVQASQ* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1235 172 Pfam Ring finger domain 122 164 IPR001841 -
Dod06g1235 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 170 IPR045899 -
Dod06g1235 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 168 IPR013083 -
Dod06g1235 172 SMART ring_2 122 163 IPR001841 -
Dod06g1235 172 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Dod06g1235 172 SUPERFAMILY RING/U-box 100 167 - -
Dod06g1235 172 CDD RING-H2_PA-TM-RING 124 164 - -
Dod06g1235 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1235 Dod-Chr6 16466969 16467487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1235 24 168 C3H Transcription Factor Family AT2G35910 39.189 7.58e-25 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1235 - - gmx:102663718 179.874