Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1212 ATGGAAGCACCAGAGGAACTCTCTTTGGGTTCCAAAGAGCATACAAACATTGTCAAAGGCAAGAGGACCAAAAGGGTGAGGCCACAATCCCCTATCCCCTTCTCCATCACTGCGAATTCCTGTACTGCAGAAGGGGATAGAGAGGATTGCTACAATGGCAATGACGACGACAACAACAACAACGACAATAACATGATCATCAAAGACGATGATCGAAACAATACCAACAACAATAGCAATAGCAACAACAACAACTCCCCGACCACTTCCTCTGCAGGGCTACAAGACAGCACAGATGAAGAGGAGGACATGGCAAACTGCCTGATCCTCCTGGCACAAGGACAATCAAGGGAATCACCGAAACGTGCCGAGGAAGATGGCGGCGTGAGCTACAACAAGTACAGCAGTAGGAAGTTCATGGAAGCTGCAGGAATTGGGTATGGAAGGACTGGGTATTATGTGTATGAGTGCAAGACATGTAACAGGACTTTCCCTTCATTTCAAGCACTTGGAGGACACAGGGCAAGCCACAAGAAGCCTAAGGCCATGGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCAGCAACGGCAATTGGCCAAGAGAGGAAGCAGCAAAACTTGTTGTCATCAGATGAGGAAGAGTTCCAATTCAAGAACAACAAGCCGAGTTTCCTTCAGTTGAACACAAGAGGGAATTTGTACAGCAATAACAATAGCAACAACAACAATAACAAGTCCAAGGTGCATGAGTGTTCCATTTGTGGTGCTGAATTCACATCAGGGCAGGCACTTGGTGGCCATATGAGGCGGCACCGGGCGCCCGTAGGGACTAACACAACACTGTCATTGACCCCAATGGCATTGGAACCAGAAGAGGAACAACCTAGGAAGAGGAGGAATGTGCTGTCTTTGGATTTGGATCTCAACCTTCCTGCCCCAGAAGATGATCAAAGAGAATCTAAGTTTGCCTTTGCATCCAAGCAACAACAACAACAACAACAACAGCAACAACACCAGCAGCAGCAACAACAGCAACAGCAACAACAAACAAGTCTTGTCTTCTCCACCCCAGCTTTGGTGGATTGTCATTACTGA 1095 0.4795 MEAPEELSLGSKEHTNIVKGKRTKRVRPQSPIPFSITANSCTAEGDREDCYNGNDDDNNNNDNNMIIKDDDRNNTNNNSNSNNNNSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKRAEEDGGVSYNKYSSRKFMEAAGIGYGRTGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMAAAAAAAAAAAATAIGQERKQQNLLSSDEEEFQFKNNKPSFLQLNTRGNLYSNNNSNNNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPMALEPEEEQPRKRRNVLSLDLDLNLPAPEDDQRESKFAFASKQQQQQQQQQQHQQQQQQQQQQQTSLVFSTPALVDCHY* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1212 364 MobiDBLite consensus disorder prediction 1 99 - -
Dod06g1212 364 MobiDBLite consensus disorder prediction 263 349 - -
Dod06g1212 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Dod06g1212 364 SMART c2h2final6 155 177 IPR013087 -
Dod06g1212 364 SMART c2h2final6 249 271 IPR013087 -
Dod06g1212 364 Coils Coil 324 348 - -
Dod06g1212 364 Gene3D Classic Zinc Finger 153 271 - -
Dod06g1212 364 MobiDBLite consensus disorder prediction 70 95 - -
Dod06g1212 364 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 11 364 - -
Dod06g1212 364 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Dod06g1212 364 PANTHER ZINC FINGER PROTEIN ZAT5 11 364 - -
Dod06g1212 364 Pfam C2H2-type zinc finger 248 274 - -
Dod06g1212 364 Pfam C2H2-type zinc finger 154 180 - -
Dod06g1212 364 MobiDBLite consensus disorder prediction 323 349 - -
Dod06g1212 364 SUPERFAMILY beta-beta-alpha zinc fingers 154 271 IPR036236 -
Dod06g1212 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 271 IPR013087 -
Dod06g1212 364 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1212 Dod-Chr6 16222368 16223549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1212 1 364 C2H2 Transcription Factor Family AT5G04390 42.105 1.03e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod06g1212 zf-C2H2_6 7.3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1212 - - gmx:100819786 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2777 01 67634484 67635655 Dod06g1212 06 16222368 16223549 ECH
Dod07g0126 07 1508882 1510134 Dod06g1212 06 16222368 16223549 ECH
Dod10g1562 10 36322445 36323781 Dod06g1212 06 16222368 16223549 ECH
Dod03g2718 03 58818313 58818993 Dod06g1212 06 16222368 16223549 ECH
Dod06g1212 06 16222368 16223549 Dod06g1212 06 16222368 16223549 ECH