Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1172 ATGGGTGACTCACAAGACAACAACGATGCTCTTGCCAACACTAATAAACCTTCCACGGACCAGGACATTTCTGATGAGCTAGATCTGAAAATAAAGAAGTATCTCAGGGGTGGAGCTGCTAATTTTGAGGTTTTGAAAGATAAAAAGCTTAAGGGTCAACTAACTGTTAGAGAACAATTATATGGACAGTCTGCAAAAGCTGCTGCGAAGGCGGAAAAGTGGCTTCTGCCCAGTGAGGGAGGTTATCTAGAACCTGAAGGCATAGAGAAGACATGGAGGATCAAACAGGAGGCAATAGCACGAGAAGTAGACATCTTAAGCTCAAGGAAGCAATATGACATTGTTTTACCGGAACTCGGTCCATATACACTGGATTTTACGTCAAGTGGCCGGTATATGGCTGTTGGTGGCCGTAAAGGCCATCTGGGGATTGTGGACATGATGAATCTGAACCTAATCAGAGAGTTTCAGGTAAGAGAAACAGTGCATGATGTGGTATTCTTGCATAATGAGCTCGTTTTTGCTGCTGCCCAGAAAAAGTATTTGTACATCTATAATCGAGAAGGCACAGAACTTCACTGCCTCAAGGAACATGGTGCAGCGTTAAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTGGCTTCAATCAACAAATTTGGGCAGCTTCATTATCAAGATGTTACAATGGGTGAGATGGTTAATAATTTTCGAACTGGCTTAGGACGTACAAATGTGATGCAAGTGAATCCCTTCAATGGGGTTGTTGCTTTGGGTCACTCCGGTGGTACAGTTACGATGTGGAAGCCAACCAGCTCTGCTCCTCTTATCAAGATGCTGTGTCATCACGGACCTGTGTCAGCGCTAGCATTTCACTCAAATGGCCACTTAATGGCCACTGCCGGGCAAGATAAGAAGATTAAGCTTTGGGACTTGAGGAAATTTGAGCCTCTTCAAACATTACCAGGCTATGCAAGTACTTTGGATTTTAGTCAAAAGGGCGTGCTTGCTTGCGGTAGTGGATCATTTGTGCGGGTTCTGAATGATGCTTCCGGTGTGCAGAACTATTCTAGGTATATGACTCATTCCATGGCAAAAGGTTACCAGATAGGAAAATTAGTTTTTCGGCCATATGAAGATGTTCTAGGCATTGGCCATTCCATGGGCTGGTCTAGTATTCTTATTCCAGGTGCAGGAGAACCCAACTTTGACACGTGGGTTGCAAACCCATTCGAAACATCCAAACAGAGGAGAGAAAAGGAAATTCGCTCTCTTCTCGATAAGCTTCCACCTGAGACTATCATGCTTGATCCCAGCAAGATTGGTACAGTGAAAACAACAAGAAAAGAGAAGCCAGCAAAGCAAGAGAGGGAGGCTGAGATTGAAGCTGCTGTTGAAGCGGCTAGGGGCACAAAACTAAAGAAGAAAACTAAAGGAAGGAATAAGCCGGGTAAAATGATGCAGAAAAAGCAGGAAGCAATTGCTAGAGTGAAGAGGCCTTACTTAGAGCAGAAAATTAATGAGCAGGAAAACATGTCCAGAAAGAAGCAGAAAACTAGTGAGGAAGTTGAACTTCCAAAATCTTTACAGCGGTTTGCCCGTAAGAAAGCATCATCATGA 1617 0.4366 MGDSQDNNDALANTNKPSTDQDISDELDLKIKKYLRGGAANFEVLKDKKLKGQLTVREQLYGQSAKAAAKAEKWLLPSEGGYLEPEGIEKTWRIKQEAIAREVDILSSRKQYDIVLPELGPYTLDFTSSGRYMAVGGRKGHLGIVDMMNLNLIREFQVRETVHDVVFLHNELVFAAAQKKYLYIYNREGTELHCLKEHGAALRLQFLKNHFLLASINKFGQLHYQDVTMGEMVNNFRTGLGRTNVMQVNPFNGVVALGHSGGTVTMWKPTSSAPLIKMLCHHGPVSALAFHSNGHLMATAGQDKKIKLWDLRKFEPLQTLPGYASTLDFSQKGVLACGSGSFVRVLNDASGVQNYSRYMTHSMAKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGAGEPNFDTWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVKTTRKEKPAKQEREAEIEAAVEAARGTKLKKKTKGRNKPGKMMQKKQEAIARVKRPYLEQKINEQENMSRKKQKTSEEVELPKSLQRFARKKASS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1172 538 SMART BING4CT_2 357 437 IPR012952 -
Dod06g1172 538 Pfam BING4CT (NUC141) domain 358 436 IPR012952 -
Dod06g1172 538 MobiDBLite consensus disorder prediction 1 20 - -
Dod06g1172 538 Gene3D - 201 392 IPR015943 GO:0005515
Dod06g1172 538 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 319 IPR001680 GO:0005515
Dod06g1172 538 Pfam WD domain, G-beta repeat 279 310 IPR001680 GO:0005515
Dod06g1172 538 SMART WD40_4 271 310 IPR001680 GO:0005515
Dod06g1172 538 SMART WD40_4 229 268 IPR001680 GO:0005515
Dod06g1172 538 SMART WD40_4 149 186 IPR001680 GO:0005515
Dod06g1172 538 SMART WD40_4 313 347 IPR001680 GO:0005515
Dod06g1172 538 SMART WD40_4 107 146 IPR001680 GO:0005515
Dod06g1172 538 SUPERFAMILY WD40 repeat-like 116 385 IPR036322 GO:0005515
Dod06g1172 538 MobiDBLite consensus disorder prediction 470 538 - -
Dod06g1172 538 ProSitePatterns Trp-Asp (WD) repeats signature. 297 311 IPR019775 -
Dod06g1172 538 Coils Coil 501 521 - -
Dod06g1172 538 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 312 - -
Dod06g1172 538 MobiDBLite consensus disorder prediction 484 530 - -
Dod06g1172 538 MobiDBLite consensus disorder prediction 1 22 - -
Dod06g1172 538 Gene3D - 90 200 IPR015943 GO:0005515
Dod06g1172 538 PANTHER BNAANNG36350D PROTEIN 12 534 - -
Dod06g1172 538 PANTHER WD-REPEAT PROTEIN BING4 12 534 IPR040315 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1172 120 350 U-box Gene Family AT1G04510 24.490 3.53e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1172 K14768 - gmx:100802940 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1172 06 15864498 15869900 Dod06g1172 06 15864498 15869900 ECH