Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1142 ATGGCCTCCCGGAGGATCTCCGGCGGCTCATATCCTCAAGAACCACCACACTCCTCCCACCCCATCACCATGACCCGCTGTCTCTCCACCACCACCCTCTCAATGCTCCTCCTCATCCTAACAACTGCTATGACCCCATCAACTTCGTTGTTGGGAACAACGACGTCTTCTTCCCTCCTCGTGCTTCTTCTTCTTCCTCCTTCCCTCATCACTACCATGCCTATAACAATTCTTCTTCTTCCTCTCCTCTCAACCCTACTACTGCAATTACCTACTACTCCTACTTCTTCCGTTGTTGCTGCCTCAGATCATGCATTCTGCAGCAGCAGCTTAGACACTGCAGAGAAAGGGTGGCTTGGGTTCGACTCCGGGACCAACAGGTGGCCCAGGCAGGAGACTCTCTCGCTTCTGGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAACAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGGAGTGGGAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGGAAAGCTAGTAGACAAGATGGTAAGCACTACAGATTCTTCAGGCAGCTTGAAGCAATATGTGGAGAGGCTTCAAGCACTCATCCCTCAACTTCTGACAAATCCCACCATCATCATCATCATCATGCAGCAGGAAACACTAGCACTGCTGGTACTATTCAAACTCCAAGCTTCAAGATTAGCCAAGATGGTGATAATCATCATCATCATGGTAACAATAACCTCAAGTCCTCAGAAAGCCTCAGCTTCTCAAACTCATCTGAATTGGAGACATCCTCATCTGAGAACAATAATGATGAAGATCTCTCAGCAATTGCATACATGCTGAAGAACTCAAGGGGTGACAATAATAAGGAGAAAGGTTTGGATAATAATCTGATACCAAGCCATCATCATCATCATGGGAGGGTCAGAAGAAGCTGGAGGGCCAAGGTTGAGGAGATAGTTGGTTCCCACATGAGGAAGATCATTGAGACTCAAGATGCTTGGATGGAGAGAATGCTGAGTGTTGTTGAGCAAAGGGAGCAAGAAATGGCATCTAAGGAGGAAGAGAGGAAGAAGAAGGAGACAATGAGGTTTGACCAAGAAGTACATGACCTTTGGGCTAAAGAGAGAGCTTGGGTGGAAGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACATTGGGAATAATAATAATAATAATAGAGAGCTTGAATTAGCATTGCCATTTGATGGAGCAACGGTTGGAATTGGTAATAATAACAAGAACAAGAGCTTGCTGCAGCAGGCAACAACAACAAATGATGATGGCAATGAGTATCATAACAGTGGTGGTGGATGGAGTGAAATGGAGATTTCAAACTTGATACAGTTGAGGACTGGTTTTGAACAGCGATTGAGGGAAAATGGGTACTTGGAGAATGGGGTTTGGGATGAGATAGCAGCAAAGTTGGCTTGTTTGGGATTTGACAGGAGTGCAGCTGAGTGCAAGCAAATATGGGATGAGATCAGCATCTCACTGGGAAGGACAGTGGAGTGTGGTGCCAAAACTAGGCCTTGGTGTTTGGGACTTAAGCTGACGGATGATGATATTGACCTTTGA 1668 0.455 MASRRISGGSYPQEPPHSSHPITMTRCLSTTTLSMLLLILTTAMTPSTSLLGTTTSSSLLVLLLLPPSLITTMPITILLLPLLSTLLLQLPTTPTSSVVAASDHAFCSSSLDTAEKGWLGFDSGTNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEASSTHPSTSDKSHHHHHHHAAGNTSTAGTIQTPSFKISQDGDNHHHHGNNNLKSSESLSFSNSSELETSSSENNNDEDLSAIAYMLKNSRGDNNKEKGLDNNLIPSHHHHHGRVRRSWRAKVEEIVGSHMRKIIETQDAWMERMLSVVEQREQEMASKEEERKKKETMRFDQEVHDLWAKERAWVEARDAALIEVVRKHIGNNNNNNRELELALPFDGATVGIGNNNKNKSLLQQATTTNDDGNEYHNSGGGWSEMEISNLIQLRTGFEQRLRENGYLENGVWDEIAAKLACLGFDRSAAECKQIWDEISISLGRTVECGAKTRPWCLGLKLTDDDIDL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1142 555 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 87 538 - -
Dod06g1142 555 CDD GT1 126 192 - -
Dod06g1142 555 ProSiteProfiles Myb-like domain profile. 126 185 IPR001005 -
Dod06g1142 555 PANTHER - 87 538 - -
Dod06g1142 555 MobiDBLite consensus disorder prediction 268 293 - -
Dod06g1142 555 Coils Coil 357 384 - -
Dod06g1142 555 MobiDBLite consensus disorder prediction 238 254 - -
Dod06g1142 555 SMART sant 465 528 IPR001005 -
Dod06g1142 555 SMART sant 124 187 IPR001005 -
Dod06g1142 555 MobiDBLite consensus disorder prediction 306 332 - -
Dod06g1142 555 MobiDBLite consensus disorder prediction 1 23 - -
Dod06g1142 555 Pfam Myb/SANT-like DNA-binding domain 469 525 IPR044822 -
Dod06g1142 555 Pfam Myb/SANT-like DNA-binding domain 126 213 IPR044822 -
Dod06g1142 555 Gene3D - 128 190 - -
Dod06g1142 555 Gene3D - 469 528 - -
Dod06g1142 555 ProSiteProfiles Myb-like domain profile. 467 526 IPR001005 -
Dod06g1142 555 MobiDBLite consensus disorder prediction 217 293 - -
Dod06g1142 555 MobiDBLite consensus disorder prediction 306 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1142 Dod-Chr6 15215888 15218725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1142 127 526 Trihelix Transcription Factor Family AT5G03680 41.627 2.07e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dod06g1142 Myb_DNA-bind_4 4.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1142 - - gmx:100787750 543.888