Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1120 ATGGGAGTTCTGTCTGTGCCTCTCAATTTCAGCAAATGTCAAACCTTTTCCTTTGTGAAACCCAAAAAATCCCAAATTCAGCACATTTCACCAACCATACGATTACCCAACAAAAACAATTATCCCAATCTTTCTTCTTCTTCTTCATGTAATGATTGGTCCTTTACTAGGATAGTTGCAGCAGCATCAGCAACATACCCTTCCTTCACTCCTTCCTCCACACAGAACCGCCATTGGATGGTGCTCATGGAGAGGCCTCCTTATGGGGTCACTTCTAAGCAACAAGTCATTGATTACTATGTCAACACTCTGCAGAAACTTCTTGGCAGTGAGAAAGATGCTCAAATGTGTCTATATGACGCTTCCTGGGATACACATTTTGGTTTTTGCTGTGACATTGATGAAGAATTATCCTCCCAGCTTGCCAGTTTACCTGGGATCTTATTGGTTAGGCCTGATCCGGATTTCAACTCTTTGAAGAAGGACTATAGTTTATCAAGTGTCCAGGCAGGTCACCTGTCAAGCTCAGAACCACAATTTGAAACCAGTATGTTGTTCCCTGCTGGGAATTCGAAGCACTGGCTTGTCAGAATTGATAAACCTGGGGTTGGGGTTGTTACTAAGGCTCAGATTGTAGATTATTATGTTCAAATACTGACAAAGGTCCTGGGAAATGAGAAGGATGCTCAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGCTTTTGTTGTGAACTTGACAACGATTGTGCACTGGAGCTAGCTGTTGTGCCTGGTGTCTTATCAGTTCAAGCAGATAATACTTTTGAGTCAGACAATAAGGATTATGAAGGTAGTAACTTAGAAGATAGTTTGAATGCACAAAACTCTTCTGAAGCAAGTCAGGCAGCTCCCCAGAAAACAAAAAAGCTTTTTGTGACAGGGTTATCGTTTTATACATCTGAGAAAACCTTACGAGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAATTATCATGGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTGAAAGAGATGAATGGCAAGATTATTAATGGTTGGATGATAGTGGTAGATGTTGCCAAGACTAACCCACCGAGGTACAACAGGGGTGGTGCCAGACCATCCACTTAA 1191 0.4156 MGVLSVPLNFSKCQTFSFVKPKKSQIQHISPTIRLPNKNNYPNLSSSSSCNDWSFTRIVAAASATYPSFTPSSTQNRHWMVLMERPPYGVTSKQQVIDYYVNTLQKLLGSEKDAQMCLYDASWDTHFGFCCDIDEELSSQLASLPGILLVRPDPDFNSLKKDYSLSSVQAGHLSSSEPQFETSMLFPAGNSKHWLVRIDKPGVGVVTKAQIVDYYVQILTKVLGNEKDAQMCIYHVSWKTNFGFCCELDNDCALELAVVPGVLSVQADNTFESDNKDYEGSNLEDSLNAQNSSEASQAAPQKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPRYNRGGARPST* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1120 396 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 61 157 IPR037045 -
Dod06g1120 396 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 186 272 IPR037045 -
Dod06g1120 396 Gene3D - 273 396 IPR012677 -
Dod06g1120 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 382 IPR000504 GO:0003723
Dod06g1120 396 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 25 395 - -
Dod06g1120 396 SUPERFAMILY RNA-binding domain, RBD 293 393 IPR035979 GO:0003676
Dod06g1120 396 SMART rrm1_1 305 378 IPR000504 GO:0003723
Dod06g1120 396 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 25 395 IPR039206 GO:0016554
Dod06g1120 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 372 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1120 Dod-Chr6 14774941 14779846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1120 304 386 C2H2 Transcription Factor Family AT2G19380 33.735 1.12e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1120 - - gmx:100791652 594.734