Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1113 ATGGAAGCAGTTACAGCTAGTTCCACAGACGAAACCGCCACAACCAGCGACTCACTTTCTGTAACCCTATCCCCGGTCAAGCTTTATTCGCCGCCGGCTCCGCCTCCTACCAACACTCTCGTCCGCGTCGGCAGCGGCGCCAGCGCCATCGTCGACCCCGACGGTTGCGTCGGCTCCGGCGAGGCCGAGTCCCGGAAGCTCCCTTCGTCAAAATACAAAGGCGTGGTGCCACAGCCTAACGGTCGCTGGGGAGCACAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACGAGGAGGATGAAGCCGCTAGGGCCTACGACATCGCCGCCGTGAGGTTCCGCGGCAAGGACGCCGTCACAAACTTCAAGCCACTCGCTGGCGGCGACGGCGGCGACTCCGACGACGGCGAGGCCGAGTTCCTGAACTCGCATTCCAAGCCGGAGATCGTAGACATGCTAAGGAAGCACACCTACGACGACGAGCTCCGGCAGAGCAAGCGCGGAGGCGCGTGGGGCGGAAAGAAGCACCGCCGCAACGGATTCGGAGACGGCGCGGACTCAGCTTCCTTCGATTCTTCTGGCGCGTGCGACGCTCGGGCGCGTGAGACTCTGTTCGAGAAAACGGTTACGCCGAGCGACGTTGGGAAACTGAATCGGTTAGTTATACCGAAACAGCACGCGGAGAAGCACTTTCCGTTACAGGGAAACGGTTTTGCCGCGGCGGCGAAAGGAGTTCTGTTGAATTTCGAGGACGCTGGAGGGAAAGTGTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGCTACGTGCTAACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAGCCTCCAAGCCGGTGACTCGGTCAGGTTTTACCGGTCGACCGAACCGGACGGTCAGCTCTACATTGATTGCAAAGGCAGGGTGGGTAGCGGTGGTGTTGTTAGCGGCGTTAGTGAAGTTGATAGGAAGAATAACAAGAACAATAATGGTGGTGGGTTGTTTATTCCTGTTGGACCGGTTGTTGAGCCGGTTCAGATGGTTCGGCTTTTTGGGGTCAACCTTTTGAAACTACCCGGCTCCGATGGTGTTGGTGTTGGATGCAATGGGAAGAGGAAAGAGATGGAACTGTTTGCGTTTGAATGTATCAAGAAGCCGAAAATAATTGGAGCTTTGTAA 1194 0.5695 MEAVTASSTDETATTSDSLSVTLSPVKLYSPPAPPPTNTLVRVGSGASAIVDPDGCVGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAVRFRGKDAVTNFKPLAGGDGGDSDDGEAEFLNSHSKPEIVDMLRKHTYDDELRQSKRGGAWGGKKHRRNGFGDGADSASFDSSGACDARARETLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQGNGFAAAAKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLQAGDSVRFYRSTEPDGQLYIDCKGRVGSGGVVSGVSEVDRKNNKNNNGGGLFIPVGPVVEPVQMVRLFGVNLLKLPGSDGVGVGCNGKRKEMELFAFECIKKPKIIGAL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1113 397 ProSiteProfiles AP2/ERF domain profile. 71 126 IPR001471 GO:0003700|GO:0006355
Dod06g1113 397 SMART B3_2 208 314 IPR003340 GO:0003677
Dod06g1113 397 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
Dod06g1113 397 MobiDBLite consensus disorder prediction 1 25 - -
Dod06g1113 397 ProSiteProfiles B3 DNA-binding domain profile. 208 314 IPR003340 GO:0003677
Dod06g1113 397 MobiDBLite consensus disorder prediction 168 187 - -
Dod06g1113 397 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 6 397 - -
Dod06g1113 397 SUPERFAMILY DNA-binding pseudobarrel domain 206 312 IPR015300 -
Dod06g1113 397 Pfam B3 DNA binding domain 208 308 IPR003340 GO:0003677
Dod06g1113 397 CDD B3_DNA 207 308 IPR003340 GO:0003677
Dod06g1113 397 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 6 397 IPR044800 GO:0003700
Dod06g1113 397 CDD AP2 70 125 IPR001471 GO:0003700|GO:0006355
Dod06g1113 397 SUPERFAMILY DNA-binding domain 70 126 IPR016177 GO:0003677
Dod06g1113 397 SMART rav1_2 71 132 IPR001471 GO:0003700|GO:0006355
Dod06g1113 397 MobiDBLite consensus disorder prediction 1 39 - -
Dod06g1113 397 Gene3D - 196 318 IPR015300 -
Dod06g1113 397 MobiDBLite consensus disorder prediction 54 73 - -
Dod06g1113 397 Gene3D AP2/ERF domain 70 127 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1113 Dod-Chr6 14649056 14650347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1113 7 397 B3 DNA Binding Superfamily AT1G25560 54.523 5.69e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Dod06g1113 B3 5.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1113 K09287 - gmx:100789009 518.85