Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1108 ATGAAACAGGAAGATCAAGGGCAGTGTTCTTCTCAAGCCATCAACAACTTCCACACCTATCAAGAGCAGCTACTACTTCAACAACAAATCATGATGCAACAACAACAACAACAACAACAAAACAGTGGTGATGTCTTTGGAAGAGGGTTGAACATGTTTCCTTCTGATCAAGTCTCACCATGGTCCATGCCACAGGTTCACCACCCTTTCAATAACCCTGTTAGAGATCACCACCAACACCATGACCCTTTTCTTGTCCCTCCTCAACCTTCCCCTTATGCAAGCTTCTTCAACAGAAGGGTTCCTTCTTTGCAGTTTGCATATGAGGGTCCTTCTTCTGATCACCTAAGGATCATATCGGATACCCTTCAACCTGGTTCAGCTCCCTTTGGGCTCCAAGCTGAGCTTGGAAAGATGACTGCTCAGGAAATCATGGAGGCTAAGGCTCTTGCGGCATCCAAGAGTCACAGCGAAGCTGAGAGGAGGCGCAGAGAAAGGATCAATAACCATCTTGCTAAGCTGCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAGGCATCGTTGCTAGCAGAAGTGATTCAGCATGTGAAGGAATTGAAGCGGCAAACATCAGTGATAGCAGAAACAAGCCCAGTTCCCACTGAAGCTGATGAGCTAACAGTGGATGCATCAGATGAAGATGGCAAGTTTGTGATCAAGGCCTCGCTTTGCTGTGAAGACAGGTCAGATCTATTGCCTGAACTCATCAAGACCCTGAAAGCTCTAAGGCTTAGAACCCTCAAAGCTGATATCACAACGCTTGGAGGGCGTGTCAAGAACGTGTTGTTCATCACTGGTGAAGAGGAATATTCGAGCAGTAACAGTGATGATGAGCATGGCCACTACCAACAACAGCAGCACCAGCAGTATTGCATTAGCTCAATACAAGAAGCACTCAGGGCAGTGATGGACAAGAGTGTTGGGAATGAGACTGCTTCTGCAAATGTCAAGCGACAAAGGACCAATATGATACCGATATCCTAG 1026 0.4659 MKQEDQGQCSSQAINNFHTYQEQLLLQQQIMMQQQQQQQQNSGDVFGRGLNMFPSDQVSPWSMPQVHHPFNNPVRDHHQHHDPFLVPPQPSPYASFFNRRVPSLQFAYEGPSSDHLRIISDTLQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSVIAETSPVPTEADELTVDASDEDGKFVIKASLCCEDRSDLLPELIKTLKALRLRTLKADITTLGGRVKNVLFITGEEEYSSSNSDDEHGHYQQQQHQQYCISSIQEALRAVMDKSVGNETASANVKRQRTNMIPIS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1108 341 PANTHER TRANSCRIPTION FACTOR BHLH30 72 338 IPR045847 GO:0003700|GO:0006355
Dod06g1108 341 PANTHER TRANSCRIPTION FACTOR BHLH30 72 338 - -
Dod06g1108 341 Pfam Helix-loop-helix DNA-binding domain 154 200 IPR011598 GO:0046983
Dod06g1108 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Dod06g1108 341 CDD bHLH_AtAIG1_like 146 224 - -
Dod06g1108 341 Gene3D - 146 207 IPR036638 GO:0046983
Dod06g1108 341 SMART finulus 157 206 IPR011598 GO:0046983
Dod06g1108 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 207 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1108 Dod-Chr6 14510162 14513069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1108 10 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.620 1.37e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g1108 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1108 - - pvu:PHAVU_007G101900g 447.588