Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1079 ATGGAAGAGCTACCAACGAAGCAAGGGAGCTGCAGAATAAAGAAATCTGGGAGCAGTCTTTCCAATTGTAATCGAACTGCCATTAATGCTTTATTAGATGAACTAGCAAATGGTGATATAGAACAGCAAAGGGTTGTTGCTGGTGAAATCCAGTTGCTGGCTAAGAGTAATGAAAATAACCGAGTACGTATTGCAGAGGCAGGAGCAATACCACTACTTGTGGATTTGTTGTCTTCTTCAGATCCACGCACCCAGGCGCATGCTGTAACGGCACTCCTCAATCTTTCCATCAACGAGAGTAACAAAGGGACTATAGTAAATGCAGGAGCTATACCAGATATTGTAGATGTACTGAAGAGTGGCAGCATGGAGGCTAGAGAAAATGCGGCCGCAACTCTCTTTAGTTTATCTGTTTTAGACGAGAACAAGGTTGCAATAGGAGCAGTTGGAGCTATCCCACCTCTTATAAAGTTGCTATGTGAAGGTATTCCCAGGGGTAGGAAGGATGCTGCTTATGCTATCTTTAATCTCTCAATCTATCAAGGAAACAAAGCAAGAGCTGTAAAAGCTAGCATAGTGGCAACACTGATGGATCTACAGCAATTGAAGCTAGCAAAGGAACTCGGTGCAGAAGAAGCTTTGCAGGACTTATTCAAGAATGGCACTGATAGAGCCAAGAGAAACGCTGGAAGTATATTAGAACTCTTGCAGCAGCTGGAAGGGGATAAGAATTTGCAAAATACTTAG 747 0.4297 MEELPTKQGSCRIKKSGSSLSNCNRTAINALLDELANGDIEQQRVVAGEIQLLAKSNENNRVRIAEAGAIPLLVDLLSSSDPRTQAHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKSGSMEARENAAATLFSLSVLDENKVAIGAVGAIPPLIKLLCEGIPRGRKDAAYAIFNLSIYQGNKARAVKASIVATLMDLQQLKLAKELGAEEALQDLFKNGTDRAKRNAGSILELLQQLEGDKNLQNT* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1079 248 SMART arm_5 98 138 IPR000225 GO:0005515
Dod06g1079 248 SMART arm_5 56 97 IPR000225 GO:0005515
Dod06g1079 248 SMART arm_5 139 179 IPR000225 GO:0005515
Dod06g1079 248 Gene3D - 11 247 IPR011989 -
Dod06g1079 248 SUPERFAMILY ARM repeat 27 222 IPR016024 -
Dod06g1079 248 Pfam Armadillo/beta-catenin-like repeat 140 178 IPR000225 GO:0005515
Dod06g1079 248 Pfam Armadillo/beta-catenin-like repeat 58 96 IPR000225 GO:0005515
Dod06g1079 248 Pfam Armadillo/beta-catenin-like repeat 99 137 IPR000225 GO:0005515
Dod06g1079 248 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 198 240 - -
Dod06g1079 248 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 3 199 - -
Dod06g1079 248 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 109 151 IPR000225 GO:0005515
Dod06g1079 248 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 68 110 IPR000225 GO:0005515
Dod06g1079 248 PANTHER U BOX DOMAIN-CONTAINING 198 240 - -
Dod06g1079 248 PANTHER U BOX DOMAIN-CONTAINING 3 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1079 Dod-Chr6 14032460 14033557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1079 27 241 U-box Gene Family AT3G54850 36.744 6.18e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1079 - - lja:Lj5g3v1796810.1 305.834