Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1053 ATGTCTCCAATGCATCATGAAATCCAGGTTACTGAGTTGCCCAATAGCATGAACTTGAGCGCTGATACTTCACAACTTTCAAATTCCTTTCCAGATCATATTTTAATTAATGAAAAAGTTGGAGCAGAGATTGAAAATCAAACTATGCAGGAATCAGATATAGATGGAGAAATAGATTTAATGATCAGTCATTCTAAGATGCATAACGATACTAGTGTTTCAGAAATGAATGCCGGGGAGAACCTGGGTTGCCAGGACAAGAAGTGCTCTGGGTCACTTACAAATGTAACAGACGGAAATGTTGGAATGTTTCAAATTGCTGAAGCAGTTGTCATCGATAGTAAGTGTGATAGCTTGGGTTTGGATGATGAATTGCATAAAAAGTATCAGTCTGCCTGCAAAAGCAACAATGAGGAAGCTACTTCATCTACTGTTTCATTGGTAAACCAACCTACTTTTGCCTCTGATGGAAGTGTTGAGAATCCTGATGATGACTCTGGTGCAGCAAAAATGAGCAATGCTAAGCCCTTAATAGAGTTAACTAAGCAAGAAATCAATTCATTGAGTGAAATGGACAAGGCACCTATAGCAAGTGATGATAAACCAGTAAATGAACGTACTCCAAATGGAGAAGTTGGTGAAGTTCCAGGAGAGGTTTATGCTGCTGCAGGTTTGCGCAATTATGTAATGGATGAAGAGATGCAGCCAGAAACTCAGGTTGGACAAGATAGCGAAAGGGAAATAAATCAGTCCAATCATGTTTTAGCAAAACAATGGTGTCAATTTACAACAGGGGAATGTGGTAATGGGTTGAATGATGAAGTCATTTCAGAGTCTGTAAAGCAGTTCAAGACCCAAGAGACAAATACAAGTTTAGCTGCAAAAGGTGAAAATAGAAGTTTAGCTGTTGCGGAGTTGGGACTTCCTGAAGTTTCAGTGGAAACTTGTCCTAAAGAAGACTTGCGTATTCAGTTTGTTTCAGATAAAGAGAAGGAACCGAGAATCCAGCCTATCAGTAAAATTGATGAAGGACATAACTCAGTTACTGATATGTCATTAAAGGACTCTTCCTCATCAATCCAGGAATGTTCTAAAATTGAGAAAGACACACATGTTAGAGATACAAATGGAAGCGAAGTTAATTTGTTGCAAGACAATACAGAGCTGGAAAGCTCAGAGTTGACTAAACCAGTTCCAAGATCAAATGCTCGGAAGAAAAGAAAGAGGGAAGTGGAACAGATAACAGAGAATCAATTTGATTGCCACAATTTTATTAGAAGTCCATGTGAAGGGCTGAGGCCAAGAGCTGTAAAGATGGCCACTGATAAAAGTGGGGGAGATGTCAGCCAAAATAACACGGAAAGTCAGGAGGCTAGAAGGGCACAAAGACCCTCTGAAGTTCCAGTTCCTCGCAAGAATAAAAAGGAGAAAGTTGAAAAGCCCCACAGGTGTGACCTTGATGGCTGCAATATGAGTTTCATGACTAAGGGTGAGTTACAGTTGCACAAGCGTAACCTTTGCCCTCATAAAGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATGCTCTCCTCCACCAGCGTGTTCACGATGACGAGAGGCCCCTAAAGTGCCCATGGAAAGGTTGCACCATGTCATTCAAGTGGGCGTGGGCAAGGACGGAGCATATACGCGTGCATACCGGGGAGAAGCCTTATAAATGCAAGGTTGAGGGATGTGGTCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGGAGGAAAACAGGACACTATGTGAAATCTCCTGCTTGA 1794 0.4142 MSPMHHEIQVTELPNSMNLSADTSQLSNSFPDHILINEKVGAEIENQTMQESDIDGEIDLMISHSKMHNDTSVSEMNAGENLGCQDKKCSGSLTNVTDGNVGMFQIAEAVVIDSKCDSLGLDDELHKKYQSACKSNNEEATSSTVSLVNQPTFASDGSVENPDDDSGAAKMSNAKPLIELTKQEINSLSEMDKAPIASDDKPVNERTPNGEVGEVPGEVYAAAGLRNYVMDEEMQPETQVGQDSEREINQSNHVLAKQWCQFTTGECGNGLNDEVISESVKQFKTQETNTSLAAKGENRSLAVAELGLPEVSVETCPKEDLRIQFVSDKEKEPRIQPISKIDEGHNSVTDMSLKDSSSSIQECSKIEKDTHVRDTNGSEVNLLQDNTELESSELTKPVPRSNARKKRKREVEQITENQFDCHNFIRSPCEGLRPRAVKMATDKSGGDVSQNNTESQEARRAQRPSEVPVPRKNKKEKVEKPHRCDLDGCNMSFMTKGELQLHKRNLCPHKGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCTMSFKWAWARTEHIRVHTGEKPYKCKVEGCGLSFRFVSDFSRHRRKTGHYVKSPA* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1053 597 MobiDBLite consensus disorder prediction 384 411 - -
Dod06g1053 597 ProSitePatterns Zinc finger C2H2 type domain signature. 567 591 IPR013087 -
Dod06g1053 597 ProSitePatterns Zinc finger C2H2 type domain signature. 537 559 IPR013087 -
Dod06g1053 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 505 534 IPR013087 -
Dod06g1053 597 MobiDBLite consensus disorder prediction 440 480 - -
Dod06g1053 597 Gene3D Classic Zinc Finger 506 591 - -
Dod06g1053 597 MobiDBLite consensus disorder prediction 192 214 - -
Dod06g1053 597 Gene3D Classic Zinc Finger 452 505 - -
Dod06g1053 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 565 596 IPR013087 -
Dod06g1053 597 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 173 586 - -
Dod06g1053 597 SMART c2h2final6 565 591 IPR013087 -
Dod06g1053 597 SMART c2h2final6 535 559 IPR013087 -
Dod06g1053 597 SMART c2h2final6 505 529 IPR013087 -
Dod06g1053 597 SMART c2h2final6 482 504 IPR013087 -
Dod06g1053 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 535 564 IPR013087 -
Dod06g1053 597 SUPERFAMILY beta-beta-alpha zinc fingers 545 588 IPR036236 -
Dod06g1053 597 SUPERFAMILY beta-beta-alpha zinc fingers 506 542 IPR036236 -
Dod06g1053 597 PANTHER LYSINE-SPECIFIC DEMETHYLASE 173 586 - -
Dod06g1053 597 ProSitePatterns Zinc finger C2H2 type domain signature. 507 529 IPR013087 -
Dod06g1053 597 MobiDBLite consensus disorder prediction 384 398 - -
Dod06g1053 597 MobiDBLite consensus disorder prediction 152 175 - -
Dod06g1053 597 MobiDBLite consensus disorder prediction 444 458 - -
Dod06g1053 597 MobiDBLite consensus disorder prediction 459 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1053 Dod-Chr6 13499177 13500970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1053 403 593 C2H2 Transcription Factor Family AT5G04240 55.897 9.11e-66 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod06g1053 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1053 - - gmx:100819845 702.59