Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1052 ATGGGTAATGTTGAAATCCCTAATTGGCTCAAGGGGTTGCCTCTGGCGCCTGAATTTCGACCTACTGACACCGAATTTGCCGACCCAGTTGCTTATATTTCAAAGATTGAGAAGGAAGCTAGCACCTTTGGGATTTGTAAAATTATCCCACCGTTGCCCAAGCCTTCAAAAAGATATGTTTTTTCTAATTTGAATAAGTCCCTGTTGAAGTGTCCTGAATTGGGTGCTGAGATAAGTTCATTAGATGATTGTAATGTTTTGAAACCAAGTTCCGGGGATAGTGGTAGTGATGAGGTTTTGAGGGCTGTGTTTACTACTAGGCAGCAAGAACTAGGGCAGAATGTGAAGAAAACCACCAAAGGGAGTGGCCAGAATCCACTTCCAGGTGGTCAAAAGCAAGTGTGGCAAAGTGGGGAGGTTTATACACTGGAACAGTTTGAGTCTAAATCGAAGTCTTTCGCGAGAAGCGTGCTGGGGATGGTGAAGGATGTTTCTCCACTGGTTATAGAGGCTATGTTTTGGAAGGCAGCATCAGAGAAGCCTATATATGTGGAGTATGCCAATGATGTGCCTGGTTCTGCTTTTGGAGAATCCCAGGGTCAATTTCATTATAGTCATAGGAGGCGAAGAAAAAGGACTTATTATAGGAGTAGACTACATAGTTCTGATCATAAACAAACTGAAATGGATGCCGTAAGAGATATCCAAAGTGATGAGACTAAGGGTGCTTCTGCCCAAAGTCTTGTTGTAGACACAAGTTTACCAAAGCCCCATTCAGCTACAACTGTGAAAATTGCATCAAATGAAGCTACACAACCTTCTAAGGAAAGGAATTCAGATGCCAGCGATGATATGCTGGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCATCTGGCTCACTAACACGTTTCATGCCAGATGATATTCCTGGTGTTACTTCCCCCATGGTATACATTGGTATGCTGTTTAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCTTGAATTTTCTTCACACTGGCTCTGCAAAGACTTGGTATGCTGTTCCTGGAGAATATGCCTTTGCCTTTGAGGAAGTCATCCGCTCTGAGGCATATGGTAGTAACATTGATCATTTAGCTGCTTTGAAACTTTTGGGGGAGAAAACAACTCTTTTATCACCTGAGGTAGTTGTTGCATGTGGGATTCCTTGTTGCAGGTTAATACAGAACCCTGGTGAATTTGTTGTGACTTTTCCGAGAGCTTATCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCGCAGTGGCTTAGTGTAGCAAAGGAAGCTGCAGTGCGTAGAGCTGCGATGAATTATCTTCCCATGCTCTCGCATCAGCAACTGCTTTACTTGCTGACCATGTCTTTTATTTCTAGAGTACCAAGAACACTATTACCTGGTGTGCGTAGTTCTCGTCTGAGAGATCGTCAAAAAGAAGAAAGAGAGTTTTTAGTGAAAAAGGCTTTTATAGAAGATATGCTGCAAGAAAACAAACTGCTATCCGTTCTTCTTGGGAAGGAAGCAACTAAACAAGCTGTTTTATGGAATGCTGATTTACTACCAGATTCTAGCAAAGACTGTATATTACCTGATTTAGCTTCAACAACTGGAACTTCTATGGAGGACATGCCCAGTACTAATTCAGCAGATAAGAGTACTCATTGTCTGCTTGACGAGATGAGTTTGTATATGGAGAATCTGTCGGATTTATATCTTGATGGTGATGACCTTCCATCTCACTTCCAAACTGATTCAGGGGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTCTGATACAACCATCTGAGAAAGTGATGGAAATTCTTCCTGTCGATAATCATCTAGTTCAAGATTCCGCTCCCAACTCTACTGTTCCTAGCTCAGTCCCAAGGGATCCTTCTGGTTCTGAACTTTCTTCTGCAAAGGAGTCACCAGATCAATCATCGAAGTTTAATAAATGTTGGAATACGACTAGTAAATTTTTGAGGCCACGGATTTTCTGCCTGGAGCATGCTATTCAGATAGTGGAGATGTTGCAGGGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGATTATCAGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATACATATTGCTTTTGATTATAACGAGGTTCCGTTAGATATTGCATCACCAGAAAATTTGACTCTGATAGATCTGGCAATTGATGGTGAAGAACCTGATGAATGTGAAGACTGGACATCTAAACTAGGCATTAACCTGCGTTCTTGTGTGAATGCCAAGGAATAA 2382 0.4232 MGNVEIPNWLKGLPLAPEFRPTDTEFADPVAYISKIEKEASTFGICKIIPPLPKPSKRYVFSNLNKSLLKCPELGAEISSLDDCNVLKPSSGDSGSDEVLRAVFTTRQQELGQNVKKTTKGSGQNPLPGGQKQVWQSGEVYTLEQFESKSKSFARSVLGMVKDVSPLVIEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFHYSHRRRRKRTYYRSRLHSSDHKQTEMDAVRDIQSDETKGASAQSLVVDTSLPKPHSATTVKIASNEATQPSKERNSDASDDMLGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSAKTWYAVPGEYAFAFEEVIRSEAYGSNIDHLAALKLLGEKTTLLSPEVVVACGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLSVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKKAFIEDMLQENKLLSVLLGKEATKQAVLWNADLLPDSSKDCILPDLASTTGTSMEDMPSTNSADKSTHCLLDEMSLYMENLSDLYLDGDDLPSHFQTDSGALACVGCGILGFPFMTLIQPSEKVMEILPVDNHLVQDSAPNSTVPSSVPRDPSGSELSSAKESPDQSSKFNKCWNTTSKFLRPRIFCLEHAIQIVEMLQGKGGANVLIICHSDYQKIKAHARAVAEEIHIAFDYNEVPLDIASPENLTLIDLAIDGEEPDECEDWTSKLGINLRSCVNAKE* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1052 793 Gene3D Cupin 9 465 - -
Dod06g1052 793 Pfam jmjN domain 17 50 IPR003349 -
Dod06g1052 793 SMART JmjN_1 15 55 IPR003349 -
Dod06g1052 793 MobiDBLite consensus disorder prediction 648 681 - -
Dod06g1052 793 Pfam JmjC domain, hydroxylase 325 444 IPR003347 -
Dod06g1052 793 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Dod06g1052 793 MobiDBLite consensus disorder prediction 259 275 - -
Dod06g1052 793 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 792 - -
Dod06g1052 793 ProSiteProfiles JmjC domain profile. 292 461 IPR003347 -
Dod06g1052 793 SMART cupin_9 292 461 IPR003347 -
Dod06g1052 793 SUPERFAMILY Clavaminate synthase-like 292 459 - -
Dod06g1052 793 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 792 - -
Dod06g1052 793 MobiDBLite consensus disorder prediction 259 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1052 Dod-Chr6 13491654 13498757 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1052 1 793 C2H2 Transcription Factor Family AT5G04240 59.801 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod06g1052 JmjC 1.9e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1052 - - gmx:100799861 1296.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1052 06 13491654 13498757 Dod06g1052 06 13491654 13498757 ECH