Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1046 ATGGGAAGCAAATGGAAGAAAGCGAAGGTGGCTCTGGGGCTGAACCTGTGCATGTTTGTTCCGAGGACCTTAGACGACGAGTCATCGCCGCCGCACACGGCGGTTTCCTCCGAGAGGCTGTCGAGCGCCGCCCTGTTGTCGCCGGAGATGGGGTCTTCGCGGAAAACGACGCCGTTGCCGTCTTTCAAGCTGTCCAGAAGTGCCAGCAAGTCCTCCTCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAGCAAGGATCTGGCCATGCTATATTCACTGCTGAATGTTCACATTCCTTCCATTTCCACTGCATTGCTTCAAATGTGAAACATGGAAACCAACTATGTCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCTTTCTCGGGTCCCAGTTTGGATCCAATCCCAGGCAGAGTTTCACCTAGTCCAATTAATTGGCCCCAAAATGATGCTTTGATGGCTGTGGTCCATCGCCTGCCTCTACCTCATCCTCGGCGAGATTTGAATAGGCGGCATATTGTGCCGTTTTATCAGGCTCCCGAGCCAGGCATATTTGATGATGATGAATCGTTAAATCACCAAACTGTACTTTCTGAGAGAAGTCCTTGCAGTAAGAGTACTGGAGACACAGAAGCCACTAGAGCAATTGAGATTAAAACGTACCCGGAAGTATCTGCTGCTCCTGGGTCCAATGCTTATTCTAACTTCACAGTTTTGGTTCATCTCAAAGCTACTGCTGCTACAGCAGCTGCTGCAGCCAGAAGTCAAAATGTTAGTAGAAACGAGGCTAGCTTGACACAGATTTCTCAGACACCACGTGCCCCTGTTGACCTGGTTACAGTGCTTGACATCAGTGGTAGCATGGCCGGAACCAAGCTTGCACTACTAAAAAGAGCTATGGGATTTGTTATACAGAACCTAGGCTCTAATGACCGTCTTTCTGTTATTGCTTTCTCCTCCACAGCTCGTCGCCTCTTTCCTCTGTGTAGGATGACTGATTCTGGGCGGCAACAGGCTCTACAAGCTGTTAATTCTTTGGTTGCAAATGGGGGCACTAATATTGCCGAAGGACTGAGAAAAGGTGCAAAGATAATGGAAGACAGAAAAGAGAAGAATCCAGTTGCCAGCATTATACTATTATCTGATGGGCAAGATAATTACACTGTCAATGGCTCTGGAACTAACCAACCTCAACCAAATTACCAGTTGCTTCTGCCTACTTCCATCAGTGGTCGGGATAATTCAGGGTTTCAAATTCCTGTGCATGCTTTTGGGTTCGGCACAGATCATGATGCATCATCAATGCACTCAATTTCAGAGATTTCTGGTGGCACATTTTCTTTCATTGAGACTGAAGCTGTGCTGCAGGATGCATTTGCTCAATGCATTGGAGGACTTTTGAGTGTTGTTGTCCAGGAGCTGCAAGTTGAAATTGAGTGTATACATCCGGATCTGAGTCTTGTCTCACTTAAGGCAGGAAGTTACCCGAGCCGTGTCATTGCTGATAGACGCAGAGGATTTATTGATGTTGGAGACTTGTATGCGGATGAAGAGAGGGACTTTCTAGTTTCAGTTGATGTCCCAGCTACATCTGGCAATGAAACATCGTTGATAAAGGTCAAGTGTGTTTCCAAGGATCCCTTAACTCAGGAAACAGCTACATTGGAAAGTGAAGAAGTAAAGATCGAGAGGCCGGAAAAAGCTGGGCAGGTTGTAAGGTCACTTGAAGTGGACAGGCAGCGCAACAGGCTCCAAGCGGCAGAGGCGATGGCCCAGGCAAGGGTTGCAGCGGAACAAGGAGACCTATCTGGTGCAGCATTAATCCTTGAAAACTGTCGAAAGATGCTTTCAGAGACTATTTCGGCCAAATCTCATGATCGCCTGTGTGTTGCATTGGATGCTGAACTCAAGGAAATGCAAGAGAGGATGGCGAGTAGGCATGTGTATGAAGCATCTGGGAGAGCATATATACTTTCTGGATTGAGTTCACATTCATGGCAAAGAGCAACAGCAAGAGGGGATTCCACCGATAGGTCAAGTCTCGTTCAGTCATATCAGACCCCATCAATGACTGAGATGCTCACTCGATCTCAAGCGATGTTACTAGGTAGTCCATCAGGTCAGAGGCTTCTCCAGCCTCTGCTGTCATTCAGATCACAACCAAGCCCAAGGTAA 2181 0.4736 MGSKWKKAKVALGLNLCMFVPRTLDDESSPPHTAVSSERLSSAALLSPEMGSSRKTTPLPSFKLSRSASKSSSKQTCSICLTKMKQGSGHAIFTAECSHSFHFHCIASNVKHGNQLCPVCRAKWKEIPFSGPSLDPIPGRVSPSPINWPQNDALMAVVHRLPLPHPRRDLNRRHIVPFYQAPEPGIFDDDESLNHQTVLSERSPCSKSTGDTEATRAIEIKTYPEVSAAPGSNAYSNFTVLVHLKATAATAAAAARSQNVSRNEASLTQISQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVNGSGTNQPQPNYQLLLPTSISGRDNSGFQIPVHAFGFGTDHDASSMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVEIECIHPDLSLVSLKAGSYPSRVIADRRRGFIDVGDLYADEERDFLVSVDVPATSGNETSLIKVKCVSKDPLTQETATLESEEVKIERPEKAGQVVRSLEVDRQRNRLQAAEAMAQARVAAEQGDLSGAALILENCRKMLSETISAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDRSSLVQSYQTPSMTEMLTRSQAMLLGSPSGQRLLQPLLSFRSQPSPR* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1046 726 Coils Coil 624 644 - -
Dod06g1046 726 Pfam Ring finger domain 76 121 IPR001841 -
Dod06g1046 726 SMART ring_2 77 120 IPR001841 -
Dod06g1046 726 ProSiteProfiles Zinc finger RING-type profile. 77 121 IPR001841 -
Dod06g1046 726 SUPERFAMILY RING/U-box 72 127 - -
Dod06g1046 726 SUPERFAMILY vWA-like 274 465 IPR036465 -
Dod06g1046 726 Pfam von Willebrand factor type A domain 279 462 IPR002035 -
Dod06g1046 726 SMART VWA_4 277 464 IPR002035 -
Dod06g1046 726 Pfam VWA / Hh protein intein-like 628 700 IPR032838 -
Dod06g1046 726 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 704 - -
Dod06g1046 726 MobiDBLite consensus disorder prediction 46 67 - -
Dod06g1046 726 PANTHER OS10G0464500 PROTEIN 3 704 - -
Dod06g1046 726 CDD vWA_C3HC4_type 278 452 - -
Dod06g1046 726 CDD RING-H2 77 121 - -
Dod06g1046 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 126 IPR013083 -
Dod06g1046 726 ProSiteProfiles VWFA domain profile. 279 465 IPR002035 -
Dod06g1046 726 Gene3D von Willebrand factor, type A domain 279 466 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1046 Dod-Chr6 13384901 13389150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1046 52 131 C3H Transcription Factor Family AT2G18670 31.325 3.60e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1046 - - adu:107467927 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1046 06 13384901 13389150 Dod06g1046 06 13384901 13389150 ECH