Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1040 ATGGTTGGACCGAACTTCATGGACGAGATTGACTGCGGAAGCTTCTTCGACCACATCGACGACCTCCTCGACTTCCCCGTCGAGGACGTCGAAGGCGCCACCGCCGGCGCTGCATTCCCCGCCGCTGCAACCGCCGGAAACTGCAACTCGCTGGCTAGCATCTGGCCGCACGAGTCCGACTCATTTCCCGGCTCCGACTCGGTGTTTTCCGGCAACAGTGCTTCCGACCTCTCGGCAGAGCTCTCCGTTCCATATGAAGACATTGTCCAATTGGAATGGCTGTCCAATTTTGTGGAGGACTCCTTCTCTGGTGGGGGGAGCCTCACCATGAAGAAAGTGGAGCTGCAGCAGCAGCAACCATCCTGCATCACCAAGGATGACTCAGTGCACACCCAATTCCAGACATCAAGCCCGGTTTCTGTCCTTGAGAGCAGCAGCTCCTGCTCGGTAGGGAAGGCCGCGCCTCACACGCCGGAGGTTTACATCCCGGTGCCATGTGGCCGTGCACGCAGCAAGCGTCCACGCCCAGCAGCCTTCAATCCTCGCCCTGTCATGCAGCTCATCTCCCCTGCCTCCTCCTCTGTTGGGGAGAACATGCAGCCTAATGTTATTCCCACTAAGGCCTCCTCGGATTCTGAGAATGTTGCTGAGTCTCAACCTGTGGCCAAGATGCCAAAGCAGGCTTCTGCGGAGCCTAAGAAGAAAAAGAAGGTCAAGGTGTCACCTCCATTAGGCCAAGCCGATGCCAACCAGAATGCTGCACAACCGGTTAGGAAATGCATGCATTGTGAGATCACTAAGACACCACAGTGGAGGGCCGGGCCGATGGGGCCGAAAACACTCTGCAATGCATGTGGTGTACGCTACAAGTCTGGCCGGCTCTTCCCCGAGTACCGGCCTGCCGCAAGTCCAACTTTTTGCCCATCTGTGCACTCCAATTCCCATAAGAAGGTCCTGGAAATGAGGTGCAAGAGTATTGAGAAATCTGGCTTTGCAACCCATGCAGCTGCCTCACCAGAACTCATTCCCAACACTAACAGCAGCATTACCCTGGAGTACATGTGA 1065 0.5624 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVEGATAGAAFPAAATAGNCNSLASIWPHESDSFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGGSLTMKKVELQQQQPSCITKDDSVHTQFQTSSPVSVLESSSSCSVGKAAPHTPEVYIPVPCGRARSKRPRPAAFNPRPVMQLISPASSSVGENMQPNVIPTKASSDSENVAESQPVAKMPKQASAEPKKKKKVKVSPPLGQADANQNAAQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCKSIEKSGFATHAAASPELIPNTNSSITLEYM* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1040 354 PANTHER GATA TRANSCRIPTION FACTOR 1 354 - -
Dod06g1040 354 Gene3D - 255 304 IPR013088 GO:0006355|GO:0008270
Dod06g1040 354 MobiDBLite consensus disorder prediction 192 253 - -
Dod06g1040 354 PIRSF Txn_fac_GATA_plant 3 348 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dod06g1040 354 Pfam GATA zinc finger 260 293 IPR000679 GO:0006355|GO:0043565
Dod06g1040 354 MobiDBLite consensus disorder prediction 192 217 - -
Dod06g1040 354 ProSiteProfiles GATA-type zinc finger domain profile. 254 290 IPR000679 GO:0006355|GO:0043565
Dod06g1040 354 SMART GATA_3 254 304 IPR000679 GO:0006355|GO:0043565
Dod06g1040 354 ProSitePatterns GATA-type zinc finger domain. 260 285 IPR000679 GO:0006355|GO:0043565
Dod06g1040 354 PANTHER GATA TRANSCRIPTION FACTOR 8 1 354 - -
Dod06g1040 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 317 - -
Dod06g1040 354 CDD ZnF_GATA 259 316 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1040 Dod-Chr6 13326588 13330252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1040 19 322 C2C2-Gata Transcription Factor Family AT4G32890 35.484 9.04e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod06g1040 GATA 6.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1040 - - gmx:100816641 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1040 06 13326588 13330252 Dod06g1040 06 13326588 13330252 ECH
Dod02g2807 02 60331606 60334604 Dod06g1040 06 13326588 13330252 PCT