Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1039 ATGGAGAGAAGGAGGAGCTCCTCCTCATCAGAGAGGTGCTTGGATTCTCAACTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCCCTCAACACAAAAGTCTTCTACTTCCCTCAGGGCCACGCAGAACACGCCCATGGCAAAGTCGATTTTCCCCAAACCCGTGTTCCACCGCTCATCTCTTGCAGGGTCTCATCCATGAAGTACATGGCAGAACCTGAAACCGATGAGGTCTATGTCAAAATGAAGTTGACCCCTCTCAGAGAACACGAATTGGACCACTTTGAAGATGATGATTGTTTCTTGGGGAACAATATTCAGGGTAATAATAATACTCATGACGAAAAGCCTGCTTCTTTTGCCAAGACACTGACACAATCTGATGCCAACAATGGTGGGGGGTTCTCAGTGCCACGCTACTGCGCTGAGACCATCTTTCCAAGGCTGGATTACTCAGCAGAACCGCCTGTTCAGACCATCATTGCCAAGGATGTGCATGGACAGTGCTGGAAGTTCAGGCACATCTATAGAGGGACACCAAGGAGGCACCTTCTCACTACTGGTTGGAGCAACTTTGTGAACCAGAAGAAGCTTGTTGCTGGGGACTCCATTGTGTTCCTCAGGGCTGAGAATGGTGACCTTTGTGTTGGGATAAGGAGGGCCAAGAAGGGTATTGGTGGTGACACTGAGTACCCTTCAGCTGGTTGGAACAACCCTCTATTTGGTGGTGGTGGTGGTGGGAGTGGTGGCTTCTTGTGTGGTGGGAGTGAGGGCAATTTGGTCATGAGGAAAAGTGGTGGTGGTGATGAGTTTGTGGGGGGAAGGGTGGCTGCTGAATCTGTTGTTGAGGCTGTGAGCTGTGCTGTTAATGGGAGGCCCTTTGAGGTTGTGTACTATCCAAGGGCTAGCACTCCTGAGTTTTGTGTGAAGGCTTCTTCTGTGAGGGCTGCAATGCAGATTCAGTGGTGTCCTGGGATGAGGTTCAAGATGCCCTTTGAGACTGAGGACTCTTCTAGGATCAGCTGGTTTATGGGAACCATTTCTTCTGTTCAGGTTGCAGATCCCATTCGTTGGCCTGATTCCCCTTGGCGCCTTCTGCAGGTGGTGTGGGATGAACCAGATTTACTCCAAAATGTCAAGTGTGTGAACCCTTGGTTGGTTGAACTAGTCTCAAATGTGCCAACCTTCCATCTCTCTCCATTCTCACCTCCAAGAAAGAAACAAAGGTTTCTACAGGAACCAGATTTTCACCTCATGAACCAGCTTCCAATGCCACCATTCCCCAGCAACTTCCTCAACAACACTAACCCTCTATGTAACATTCAAGACCATAGTTCTGCGGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTAGCTCCATCTGATTTCCCCTTCAGCATGCAGCTTCAACCAGGGATGCTTCTTGGTGGTTTCCCTAGGCTTGACCATGCAGCACAAGCACAACCTGCCGGGCCTGCTAGTGGAATCTGCAAGAGCAGCACCAAGAACAACAATGTTGACATATCTTGCTTGTTGAGTGTGGGAAATCCTGGCCAGAGTTTTAAGGAATCCAATGAAGCAAAAGCACCTCACATCTTGTTGTTTGGAAAACTCATTCATACTGAGCAGAACTGTTCAAACAGTTCTTCTGGTAGCACAAATGGGAACAGTGTCTCTGAAGGGACTAATTCCCACAAGACATCAAACGCTTCTGATGGCCTGCATCAAAATAGTCAAATTGAGAACTCTTCTGATGGAGGGTCTCCCTGGTACAAAGATCAGCACAAAAATGATCTTGGAGCTGAAAATGTCAACATATTATGCATGGCTTTATAA 1845 0.4835 MERRRSSSSSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFPQTRVPPLISCRVSSMKYMAEPETDEVYVKMKLTPLREHELDHFEDDDCFLGNNIQGNNNTHDEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGDTEYPSAGWNNPLFGGGGGGSGGFLCGGSEGNLVMRKSGGGDEFVGGRVAAESVVEAVSCAVNGRPFEVVYYPRASTPEFCVKASSVRAAMQIQWCPGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNVPTFHLSPFSPPRKKQRFLQEPDFHLMNQLPMPPFPSNFLNNTNPLCNIQDHSSAGIQGARHAQFGLAPSDFPFSMQLQPGMLLGGFPRLDHAAQAQPAGPASGICKSSTKNNNVDISCLLSVGNPGQSFKESNEAKAPHILLFGKLIHTEQNCSNSSSGSTNGNSVSEGTNSHKTSNASDGLHQNSQIENSSDGGSPWYKDQHKNDLGAENVNILCMAL* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1039 614 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Dod06g1039 614 Gene3D - 120 224 IPR015300 -
Dod06g1039 614 MobiDBLite consensus disorder prediction 548 593 - -
Dod06g1039 614 CDD B3_DNA 121 222 IPR003340 GO:0003677
Dod06g1039 614 Gene3D - 324 397 - -
Dod06g1039 614 PANTHER AUXIN RESPONSE FACTOR 16 7 582 - -
Dod06g1039 614 MobiDBLite consensus disorder prediction 548 599 - -
Dod06g1039 614 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 582 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod06g1039 614 SMART B3_2 122 224 IPR003340 GO:0003677
Dod06g1039 614 SUPERFAMILY DNA-binding pseudobarrel domain 117 224 IPR015300 -
Dod06g1039 614 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod06g1039 614 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1039 Dod-Chr6 13310823 13313942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1039 10 598 B3 DNA Binding Superfamily AT4G30080 56.594 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod06g1039 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1039 - - gmx:100803053 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1039 06 13310823 13313942 Dod06g1039 06 13310823 13313942 ECH