Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0996 ATGTTGACTAACCTTTCCTTCCTGGAGGAAAAGATTCATCAGCTCCAGGATCTGGTTCATTTGATTGTTAGTAAGAAGTGCCAACCTTTTGCACAACCTGATGCAATTGTGACTCAGGAGCAGCAGCTCATCACAGCTGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCTGGTAGCCTTCTCCCTTCTGTTAGGCACACCCTTGCGAACACAAATCCATTGGTTGGTCAGCTTAGCCAGCTTCGCGGGATTAACCTTCCCCTCGGATCAAGCCCCAATGGTGGTATTCAGCCGCAAAATAACAGTGGGAATAAATTGTTTGATCAGTCCACTCAGAATGATGTGCCTAATGATTGTGAGATGGAGCAAAACTACCATATGGAAGAGCACGAAACAAAAGACGAAGAAGATGTGGATGAGGGAGAGAACCTTCCACCTGGTTCGTACGAGATTTTACAGTTGGAGAAAGAAGAAATCCTTGCACCCCATACGCATTTCTGCACAATTTGTGGGAAGGGATTCAAGAGAGATGCAAATCTCCGCATGCACATGCGAGGACATGGTGATGAGTACAAAACTCCCGCGGCTCTTGCGAAGCCACATAAAGAAACTGGGTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCTTATGCTGGCTGCAAGCGTAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATTTTGTGTGTCAAAAACCACTACAAAAGGACACACTGTGACAAGAGTTACACTTGCAGCAGATGCCACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACTACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACGCCTGCAATTCCTTTGGATGAAGCTAAAGGACCGACCGGTCTGCCTGACCTTGGCAACAAAGATAACAGCAGTAAGGTAGGAGGAAGCATGAACTTCTGTTTTGGATCAAATCCTTCAATTGAAAATGGGGTTCAAAACATCATGGATGTTAAAGGTAATATTGATGATCCTATCAATTATTTCTCACCTCTGAACTTTGATGGCTGCAACTTTGGTGGGTTTAATGAATTCTCCCAGCCTTCATTTGAAGATTCAGATGCTTCATTCTCTTTTCTTATGTCCGGATCTTTTAACTTTGCTCCTAAATCTGGAGGTGAATCAACTTCTGGCAATCTGTAG 1260 0.4333 MLTNLSFLEEKIHQLQDLVHLIVSKKCQPFAQPDAIVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLANTNPLVGQLSQLRGINLPLGSSPNGGIQPQNNSGNKLFDQSTQNDVPNDCEMEQNYHMEEHETKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDEAKGPTGLPDLGNKDNSSKVGGSMNFCFGSNPSIENGVQNIMDVKGNIDDPINYFSPLNFDGCNFGGFNEFSQPSFEDSDASFSFLMSGSFNFAPKSGGESTSGNL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0996 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Dod06g0996 419 Gene3D Classic Zinc Finger 151 222 - -
Dod06g0996 419 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 403 - -
Dod06g0996 419 SUPERFAMILY beta-beta-alpha zinc fingers 165 192 IPR036236 -
Dod06g0996 419 MobiDBLite consensus disorder prediction 91 120 - -
Dod06g0996 419 SMART c2h2final6 167 189 IPR013087 -
Dod06g0996 419 SMART c2h2final6 216 249 IPR013087 -
Dod06g0996 419 SMART c2h2final6 254 276 IPR013087 -
Dod06g0996 419 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 403 IPR044300 GO:0010044|GO:0010447
Dod06g0996 419 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0996 Dod-Chr6 12683300 12686210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0996 135 416 C2H2 Transcription Factor Family AT1G34370 70.383 5.06e-143 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod06g0996 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0996 - - gmx:100170687 756.133