Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0967 ATGGGGATCTCGAATCTTTTCTTGTTTTACTTCTCTTTGGTGGGTTTGTGTGCTTTGGTGGCTGGCAAAGTGGTGCTGATTGGGAACAACATCACTCTCTCCTTCGAGGATATTGAAGCTAATTTCGCTCCGACGATCAAAGGGTCTGGAGAATGCGGGGTCTTATATTTGGCAGAGCCGCTTGATGCTTGTGCTGAGCTGACAAACAAAGCTGAACATCTTCCAAATGTGATTTTACCTTTTGTTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGATAAGGTCAGAAGGGCACAAAAGGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGTATAAAAATACATGCTGTATTTGTATCAAAAGCTTCAGGTGAAATACTAAAGAAATACACTGGATTGACTGATGTGGAGCTATGGCTCATTCCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATATCCCTACTAGCTATGTCTGCAGTGTTGGCTACTTGTTTCTTCGTTCGTAGGCATCGTATAAGAAGAGAAAGGCCTCGAGCTTCTCATGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTAGAAGACAATTGTACATCAAGAACATGTGCTATATGCCTTGAAGATTATTGTGTTGGAGAGAAGCTTAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGTGTGTGTGGATTCTTGGCTTACTTCATGGAGGACCTTCTGTCCTGTTTGTAAGCGCGATGCAAGAACTGGCTTAACTGATCCTCCACCTTCAGAATCCACTCCTTTGCTTTCATCGAGCCCAGCATCTATGGCATCATCTGTCATATCCTCCGCAAGAGCATCATTAGCATCATCTTCAGCCATACAAATTGCACGGTCCCCATCCGGCTCTCATAGTCACTCTTTAGCTAGTACTCCTTATGTGCAGCCTTCTTATAGATCCTACCGGCAATCCCCATCCCTAAGCATTAGCCGAAGCTCCATGGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACATTCCATGAATTACCCATCTTTGTCATCTCTTAACTCAAGGTACATGTCTCCTCACATTCCAAGTCCGAGCAATGCTTCAGTAAGTATTCTTGGTTCATCTAGTCACCAACAGCATCCACTCCGTTACAGTGAGTCAGCTGCGAGCTTCTCACCATTTGCATCCGCAAGCTCCCTTCCAGAGTGTTAA 1320 0.4394 MGISNLFLFYFSLVGLCALVAGKVVLIGNNITLSFEDIEANFAPTIKGSGECGVLYLAEPLDACAELTNKAEHLPNVILPFVLVVRGGCSFEDKVRRAQKAGYKAAIVYDNEDGGVLVAMAGNSAGIKIHAVFVSKASGEILKKYTGLTDVELWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASHVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAVCVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSPASMASSVISSARASLASSSAIQIARSPSGSHSHSLASTPYVQPSYRSYRQSPSLSISRSSMDLRNASQRSLASHLNSPHSMNYPSLSSLNSRYMSPHIPSPSNASVSILGSSSHQQHPLRYSESAASFSPFASASSLPEC* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0967 439 CDD PA_C_RZF_like 13 163 IPR044744 -
Dod06g0967 439 MobiDBLite consensus disorder prediction 355 382 - -
Dod06g0967 439 SMART ring_2 234 275 IPR001841 -
Dod06g0967 439 SUPERFAMILY PA domain 82 145 IPR046450 -
Dod06g0967 439 ProSiteProfiles Zinc finger RING-type profile. 234 276 IPR001841 -
Dod06g0967 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 281 IPR013083 -
Dod06g0967 439 Pfam PA domain 81 142 IPR003137 -
Dod06g0967 439 Gene3D - 22 152 - -
Dod06g0967 439 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 372 - -
Dod06g0967 439 SUPERFAMILY RING/U-box 224 287 - -
Dod06g0967 439 CDD mRING-H2-C3H2C2D_ZSWM2 233 276 - -
Dod06g0967 439 Pfam Ring finger domain 233 276 IPR001841 -
Dod06g0967 439 MobiDBLite consensus disorder prediction 399 420 - -
Dod06g0967 439 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0967 Dod-Chr6 12305991 12311911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0967 21 438 C3H Transcription Factor Family AT1G22670 48.724 7.49e-121 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0967 K15692 - gmx:100791248 659.448