Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0958 ATGGCCGCCTCCTCCGCCGGTAATCCCCCAACCGCCTCCGCCTCAGCATTATCTCGCGATAACTTGAATTTCTCGCGCGATTATCCCGCTCGAATCACTCTTACCTCAGATCAGGTCAATTGCTGCACGCAAGCACTCTCCTTCTTCAAGGACAAGTTCCAGAATCTTCACACGATCGCTCAAGAGTTCGCGCACTTGCAGGCGAATAGGATAACGCCCAGTGAGATGAGGAGAAGATGCACTGTGGCTATGGATGCTGTCAATTTGAGCAAAAATCGATACGCTGATGTCTTACCGTTTGACAATAATAGGGTTGTTCTACATTCAAGTTCAGATTATAGGCCTGCAGCGCAGGGGTATATCAATGGAAGCATCATTTCGACCCCATCCCGTGGAGATATATCCCAGTTTATAGCCACACAAGGGCCGCTGCCGCACACTTATGAGGATTTCTGGGAAATGGTTATCCAATATCACTGTCCTGCAATTGTGATGCTTACTAGGTTGGTCGACCATTACAGGATGGTAAAGTGTGGAGATTATTTCCAAGCTGAGGATGGGCCTAGAGAATGTGGTAATATCTCTATTGTCAGTAAATGGATAAAATCTACTGAAACTTCACTGGTGTTGCGCCATTTGGAGGTCAACCATAGAGAGGCAGAAGATGCGCCATTATCTGTTTTGCACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCTAATGATACATCTGCTGTGCGTGAGATTTTGAAAAGATTGTACCATGTACCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGGATACTTGCTGGTGATATGTCTGCTTTAGATATTGCTAATACAATAGCTGTGTTCAGGTCCCAGCGTATCGGGATGGTACAGACCCAGGATCAGTACGTTTTCTGCTATCAAGCCATCATAGATGAATTGGAAGACCTTGTATCTCTACAGTAA 1014 0.4586 MAASSAGNPPTASASALSRDNLNFSRDYPARITLTSDQVNCCTQALSFFKDKFQNLHTIAQEFAHLQANRITPSEMRRRCTVAMDAVNLSKNRYADVLPFDNNRVVLHSSSDYRPAAQGYINGSIISTPSRGDISQFIATQGPLPHTYEDFWEMVIQYHCPAIVMLTRLVDHYRMVKCGDYFQAEDGPRECGNISIVSKWIKSTETSLVLRHLEVNHREAEDAPLSVLHIQYPEWPDHGVPNDTSAVREILKRLYHVPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSALDIANTIAVFRSQRIGMVQTQDQYVFCYQAIIDELEDLVSLQ* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0958 337 SMART PTPc_3 58 331 IPR000242 GO:0004725|GO:0006470
Dod06g0958 337 Pfam Protein-tyrosine phosphatase 88 327 IPR000242 GO:0004725|GO:0006470
Dod06g0958 337 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 5 335 - -
Dod06g0958 337 CDD PTPc_plant_PTP1 120 323 - -
Dod06g0958 337 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 248 320 IPR000387 GO:0016311|GO:0016791
Dod06g0958 337 ProSitePatterns Tyrosine specific protein phosphatases active site. 266 276 IPR016130 GO:0016311|GO:0016791
Dod06g0958 337 Gene3D Protein tyrosine phosphatase superfamily 33 331 IPR029021 -
Dod06g0958 337 SMART ptp_7 226 328 IPR003595 -
Dod06g0958 337 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 331 IPR029021 -
Dod06g0958 337 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 5 335 - -
Dod06g0958 337 PRINTS Protein tyrosine phosphatase signature 225 242 IPR000242 GO:0004725|GO:0006470
Dod06g0958 337 PRINTS Protein tyrosine phosphatase signature 137 157 IPR000242 GO:0004725|GO:0006470
Dod06g0958 337 PRINTS Protein tyrosine phosphatase signature 263 281 IPR000242 GO:0004725|GO:0006470
Dod06g0958 337 PRINTS Protein tyrosine phosphatase signature 312 322 IPR000242 GO:0004725|GO:0006470
Dod06g0958 337 PRINTS Protein tyrosine phosphatase signature 296 311 IPR000242 GO:0004725|GO:0006470
Dod06g0958 337 PRINTS Protein tyrosine phosphatase signature 119 126 IPR000242 GO:0004725|GO:0006470
Dod06g0958 337 ProSiteProfiles PTP type protein phosphatase domain profile. 59 329 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0958 Dod-Chr6 12209745 12216593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0958 4 335 Protein tyrosine phosphatase (PTP) family AT1G71860 68.072 1.43e-166 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0958 - - gmx:548044 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0958 06 12209745 12216593 Dod06g0958 06 12209745 12216593 ECH