Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0944 ATGGCCTCCTCCCAGCATCGCTGCGTTTTCGTTGGCAATATACCTTATGATGCTACAGAGGAGCAGCTTATTGAAATCTGCCAGGAGGTTGGACCTGTAGTCTCATTCAGGTTAGTTATTGACAGAGAAACTGGGAAGCCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCCCGTCGGAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGATAAAGGGAATGACAGAAATAGAGAGCAGGGTCGTGGGGGACCTGGACTGACTACAAATGTTGACACTCAGAAACAAATAGGCAGCTCAGCTGTCCATGGGGATGCCGTTCAACATCAACCTATTGGTCTTCATATTGCTATTACAGCTGCATCTGTCATGAAAGCAGCTTTAGGTGGTGCTCAATTTGGTATCCAGTCCGGTCAAAATGGTTTAGAGAGTCAATCAGCATTGGCACACGATCCTTTAACTCTTCATCTGGCTAAAATGTCAAGGAGTCAGCTGAATGAGATTATCTCTGAGGTCAAGGCAATGGCTACACAGAACAAAGAAATGGCTCGGCAGCTGTTGCTTTCAAGACCACAATTGCCTAAGGCTCTTTTCCAGGCTCAGATAATGCTAGGAATGGTGACCCCCCAAGTGTTACAAATGCCAAATCTTAGGATGGTTTCAGATCAGACCCCACAGTCTTCAGTAAATGAAGGCCCGCTCAGTCAGCCAGCATTGGTTCAACCTCAGTCCGGCCTACCCCATCCTGGACAGAGCAAGTTGCAGTCTGGTTTGACACCTTATGTTCAAGAAGGTCAAGTCAACATCATACCTCATAATCCTTTGGTTCCTAATCAACTAACTACACATCCAAGGCCTACAATTCAGCCCCGGATGCTGCTTCAACAGCATTCAATCAACCAAGTTGGGCAGCTGGGAACAATGTCAGGGCAGTCAAATTTAATGCTTCCTTCAATGAGACCCCAGTCTCTAGGTAGTTTGACTGGGAGGCCTCCAACTCAACCTTCAACTTCAACGGCCCTGAATCCGCAGATGCATGCCTCTTTGCTTCAGCATTCAGCACGCGTTGGTAGCTCAACTGTAGGACATAATATTCAGATGGTTCGTCCAGATGCAAGCTTTCAGCCTGGCCCCTCCGTATCATCAGGCACTTCTCACTTAATTAGGAAAGAAGGTGATAGATGCACTAAAGCTCTTGATGATTTAAATTGGGCCAACAGGAGTAGTACTATGGTTCACGACTCTTCCGAATCATTTACTCGCCCTTCAAAGCTCATGAAATTGGATGAGGGAAGGAACACATCCGTTTCTGCAGAGATTGCTGATGTGCCTGTGCCCAATGGATCATCCCATGTTATTGGAAGTAGCTCATTACCAGTACATGCAGCTCCTAAAGCAGAAGTAGGATACTCTGAGCAACAATCTTCTCAGCTTCCACCTGATGTGGAGTCTGTTTTACTGCAACAAGTGTTGAATCTAACGCCGGAGCAATTGAGTTTGCTGCCTCCGGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTACGGCGAGATCAGACGCAGCCATCATAG 1620 0.4654 MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGLTTNVDTQKQIGSSAVHGDAVQHQPIGLHIAITAASVMKAALGGAQFGIQSGQNGLESQSALAHDPLTLHLAKMSRSQLNEIISEVKAMATQNKEMARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNLRMVSDQTPQSSVNEGPLSQPALVQPQSGLPHPGQSKLQSGLTPYVQEGQVNIIPHNPLVPNQLTTHPRPTIQPRMLLQQHSINQVGQLGTMSGQSNLMLPSMRPQSLGSLTGRPPTQPSTSTALNPQMHASLLQHSARVGSSTVGHNIQMVRPDASFQPGPSVSSGTSHLIRKEGDRCTKALDDLNWANRSSTMVHDSSESFTRPSKLMKLDEGRNTSVSAEIADVPVPNGSSHVIGSSSLPVHAAPKAEVGYSEQQSSQLPPDVESVLLQQVLNLTPEQLSLLPPEQQQQVIQLQQALRRDQTQPS* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0944 539 MobiDBLite consensus disorder prediction 237 268 - -
Dod06g0944 539 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Dod06g0944 539 Gene3D - 1 115 IPR012677 -
Dod06g0944 539 Gene3D - 156 230 - -
Dod06g0944 539 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 228 IPR025742 -
Dod06g0944 539 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
Dod06g0944 539 CDD RRM_CSTF2_CSTF2T 9 83 - -
Dod06g0944 539 SMART rrm1_1 8 81 IPR000504 GO:0003723
Dod06g0944 539 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Dod06g0944 539 Pfam Transcription termination and cleavage factor C-terminal 501 533 IPR026896 GO:0031124
Dod06g0944 539 MobiDBLite consensus disorder prediction 83 107 - -
Dod06g0944 539 Gene3D - 492 538 IPR038192 -
Dod06g0944 539 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 2 534 - -
Dod06g0944 539 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 2 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0944 Dod-Chr6 11915066 11922694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0944 9 150 Eukaryotic Initiation Factors Gene Family AT1G71770 29.452 1.90e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0944 K14407 - gmx:100806489 807.364