Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0935 ATGGCGGCGGCGATTTCATCACCGATGGGACAGTCAGGGGTGGCGGCAGCGACGGCCGCGACGGCGGCTGTGATGGGAGGAGGGGCGTTCTCAAACGCGTCGCTGTACGTGGGGGATCTGGAAGGGAATGTGATCGAGGCGCAGCTGTATGATCTGTTCAGCCAGGTGGGCCCCATTGCCTCCGTTAGGGTTTGCAGGGATCTCACCAAGCGATCCTCTCTCGGTTACGCTTACGTCAACTTCGCCCACGCTCACGATGCTGCCAATGCGTTGGAGCTTCTGAACTTTACTCATGTGAATGGGAAACCAATTCGCATTATGTTTTCTCAACGGGATCCTAGCATTCGGAAAAGTGGATATGCCAATGTGTTCATTAAGAACCTGGACTCCTCAATTGACAACAAGGCGTTACATGACACTTTTGGTGCCTTTGGCAATGTACTTTCTTGTAAGGTTGCTATTGATAGCAATGGTCAGTCAAAAGGGTATGGTTTTGTACAGTTTGACAATGATGAGGCTGCTCAGAATGCCATCAACCAGTTGAATGGCATGTTAATAAATGATAAACAAGTCTTTGTTGGACACTTTGTTCGGCGCCAAGAAAGGGCTCGAGCGAATGGTTCACCAAAGTTTACTAATGTGTATGTGAAAAATTTTTCTGAAACATATACTGATGATGACCTGAAGCAGCTCTTTGGTCCCTGTGGTACCATAACGAGTGCAACTGTCATGAAAGATGCAAATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTTCAGAGTCCAGATTCCGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACAACTATCAATGATGACAAGGTTTTATTTGTTGGGAGAGCTCAGAGGAAGGCAGAAAGAGAGGCTGAGTTGAAAGCCAAATTTGAGCAGGAAAGAATAAGCAGATATGAGAAGTTACAAGGTGCTAATTTGTACGTGAAAAATCTTGATGACAGCTTCAATGATGAGAAGTTGAAGGATCTATTTTCTGAATTTGGAACAATAACATCTTGCAAGGTGATGCTTGATCCACATGGGCATAGCAGGGGGTCTGGTTTTGTGGCCTTCTCTACTCCCGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGTTGATTGGACGGAAGCCTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCTCGTCTGCAGGCTCATTTTGCTCAAATTCGATCACCTGGAGGCATGGCACCTTTGCCTGCAGGAATTCCTGGATATCATCCAGGGGCACCAAGGCTTGCCCCTCAACAATTGTATTTTGGTCAAGGAACACCTGGCTTCATGCCACCACAGCCTGCCGGCTTTGGTTTCCAGCAGCAAATCTTGCCTGGAATGCGGCCTGGTGTTGCTCCAAATTTCATTATGCCATACCACCTTCAGAGACAGGGTCAGCCTGGGCAGAGGATGGGCATCCGAAGAGGGGGAAACCTCCAACAGGTGCAGCAGAACCAGATGCTGCATCGTAACTCCAATCAAGGGTTTAGATATATGGGCAACAGCCGAAATGGTATGGATCCATCTGTAGTCCCTCAAGGTCTAGTGGGTCCAATGATGCCGATGGCCTTTGATAGTTCTGCAGCGCCTATTGATAATCAGCGTCCTGGAACCGTGTCTACCACGCTTGCCTCTGCTCTGGCATCTGCAACCCTGGAAAATCAGCATATGATGCTGGGTGAACATCTGTATCCCCTTGTGGAGCGTCTCACTCCTACTCAACATACAGCAAAGGTGACAGGGATGTTGCTGGAAATGGACCAGTCAGAGGTAATCCATCTTATTGAGTCTCCTGAGGACCTAAAGATAAAGGTGTCTGAGGCAATGCAGGTCCTTCGTGAAGCTGCATCAGGTTCTGATGTTGGTGATCAGCTTGGCTCATTGTCATTGAATGAATGA 1947 0.4782 MAAAISSPMGQSGVAAATAATAAVMGGGAFSNASLYVGDLEGNVIEAQLYDLFSQVGPIASVRVCRDLTKRSSLGYAYVNFAHAHDAANALELLNFTHVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDSSIDNKALHDTFGAFGNVLSCKVAIDSNGQSKGYGFVQFDNDEAAQNAINQLNGMLINDKQVFVGHFVRRQERARANGSPKFTNVYVKNFSETYTDDDLKQLFGPCGTITSATVMKDANGKSRCFGFVNFQSPDSAAAAVERLNGTTINDDKVLFVGRAQRKAEREAELKAKFEQERISRYEKLQGANLYVKNLDDSFNDEKLKDLFSEFGTITSCKVMLDPHGHSRGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKARLQAHFAQIRSPGGMAPLPAGIPGYHPGAPRLAPQQLYFGQGTPGFMPPQPAGFGFQQQILPGMRPGVAPNFIMPYHLQRQGQPGQRMGIRRGGNLQQVQQNQMLHRNSNQGFRYMGNSRNGMDPSVVPQGLVGPMMPMAFDSSAAPIDNQRPGTVSTTLASALASATLENQHMMLGEHLYPLVERLTPTQHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAASGSDVGDQLGSLSLNE* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0935 648 CDD RRM1_I_PABPs 34 113 - -
Dod06g0935 648 SMART poly_2 567 631 IPR002004 GO:0003723
Dod06g0935 648 SUPERFAMILY RNA-binding domain, RBD 33 200 IPR035979 GO:0003676
Dod06g0935 648 Gene3D - 196 310 IPR012677 -
Dod06g0935 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 633 IPR002004 GO:0003723
Dod06g0935 648 PANTHER RNA BINDING PROTEIN 25 636 - -
Dod06g0935 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Dod06g0935 648 PANTHER POLYADENYLATE-BINDING PROTEIN 25 636 - -
Dod06g0935 648 Gene3D - 122 195 IPR012677 -
Dod06g0935 648 SUPERFAMILY RNA-binding domain, RBD 312 411 IPR035979 GO:0003676
Dod06g0935 648 SUPERFAMILY PABC (PABP) domain 510 633 IPR036053 GO:0003723
Dod06g0935 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Dod06g0935 648 Coils Coil 285 313 - -
Dod06g0935 648 CDD RRM4_I_PABPs 315 393 - -
Dod06g0935 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 281 IPR000504 GO:0003723
Dod06g0935 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 190 IPR000504 GO:0003723
Dod06g0935 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 386 IPR000504 GO:0003723
Dod06g0935 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Dod06g0935 648 Gene3D - 312 413 IPR012677 -
Dod06g0935 648 Gene3D - 553 633 - -
Dod06g0935 648 SMART rrm1_1 317 389 IPR000504 GO:0003723
Dod06g0935 648 SMART rrm1_1 34 107 IPR000504 GO:0003723
Dod06g0935 648 SMART rrm1_1 122 194 IPR000504 GO:0003723
Dod06g0935 648 SMART rrm1_1 213 286 IPR000504 GO:0003723
Dod06g0935 648 SUPERFAMILY RNA-binding domain, RBD 208 298 IPR035979 GO:0003676
Dod06g0935 648 Pfam Poly-adenylate binding protein, unique domain 563 628 IPR002004 GO:0003723
Dod06g0935 648 Gene3D - 29 121 IPR012677 -
Dod06g0935 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Dod06g0935 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Dod06g0935 648 SMART rrm2_1 122 194 IPR003954 GO:0003676
Dod06g0935 648 SMART rrm2_1 213 285 IPR003954 GO:0003676
Dod06g0935 648 SMART rrm2_1 34 107 IPR003954 GO:0003676
Dod06g0935 648 SMART rrm2_1 317 389 IPR003954 GO:0003676
Dod06g0935 648 CDD RRM2_I_PABPs 119 195 IPR045305 -
Dod06g0935 648 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 33 629 IPR006515 GO:0003723
Dod06g0935 648 CDD RRM3_I_PABPs 211 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0935 Dod-Chr6 11835264 11841009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0935 32 642 Eukaryotic Initiation Factors Gene Family AT1G71770 59.040 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0935 K13126 - gmx:100783163 1070.84