Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0906 ATGGTTTCAGAGCTGACACAAGTGGTGTCAGGGCATGCCAGCACACAGTGGGGCCACCAAGGAAGGAGCGGTTTTCCTATGATGTCAGGTTTTATGCATGTCCCTTATTCTTATTCTTCATCATCTCCTCATGCTTTGTCTTCTTCTTCTTCTTCTTCTTCTGCCTCTCTTTTGGGGTCTCCCTCTGGCTCTTCCTCGTGGGTTGGACACAAAAGGGGACGTGAACAAGAAGAGGCTAGTGGTGGTGCTTCTTCCACTCATCAGTTGGTGCAAGATGTGACTGGGTTTTATAGGACCATTGGTGACTTCACAGTGCCTTCCCAAGTACATGGTCGAGGAGACTCATCATCATCAGTGACAGAAGAAGCAACAAACCTTGCCGCTACCACTACAGCAACACCATCCACCGAAAGTGCACCACCGCAAGAAGAAGAAACAGGGGAGAGGAAGAGGAGATACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAGATTCGCGACCCACACAAAGCAGCAAGAGTGTGGCTCGGCACCTTCGACACAGCAGAGGCAGCAGCAAGAGCTTACGATGAAGCCGCATTGAGGTTCAGAGGAAACAGAGCAAAACTCAACTTCCCTGAAAATGTCAGAGCAATACCAATACCACCACAGCCACCCCATCACAGTTTTCCGGCGATAGGGCCCGCCGTTCAGGATTCTCCGGCACCCCTTTTCAGACCAACGCCGCCGATGCCATTCTTTCACACGGCGGCGCCACCGCCGCCGGCTTTTCAGGGGTCCTCTGAGCTGATGAGAGATTATTTGCAATACTCTCAGTTGTTGAAGAGTTCTGGTGATTTTCATGGACTTGACCAGTGGCTCTATGGTTCGCAAATGGCATTACCTCAGTCTTCGTTAATACCATCAACGTTATCATTGTCTTCGTCTTCGTCGATTACTCTGTCGTCTTCTTCGTCGCCAACTGCATTTTCACCGTCTACTCAATTGTCCTCTGCTTCGTTTCCCCTGTTTTCTTCCAGTCAGCAAGTGGGGTTTTTCCGGCCGCCGCGAGACCACTCTCAAGGCGACGGCGACGGCGACGGCAGCGGAGGAAGTGGAGGGTCGGTTTTTCCGCCTTCAACGTGGTCAGATACCGGTGGCTTTCCCCCATCATCTGGTTGA 1170 0.5205 MVSELTQVVSGHASTQWGHQGRSGFPMMSGFMHVPYSYSSSSPHALSSSSSSSSASLLGSPSGSSSWVGHKRGREQEEASGGASSTHQLVQDVTGFYRTIGDFTVPSQVHGRGDSSSSVTEEATNLAATTTATPSTESAPPQEEETGERKRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRAIPIPPQPPHHSFPAIGPAVQDSPAPLFRPTPPMPFFHTAAPPPPAFQGSSELMRDYLQYSQLLKSSGDFHGLDQWLYGSQMALPQSSLIPSTLSLSSSSSITLSSSSSPTAFSPSTQLSSASFPLFSSSQQVGFFRPPRDHSQGDGDGDGSGGSGGSVFPPSTWSDTGGFPPSSG* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0906 389 CDD AP2 152 211 IPR001471 GO:0003700|GO:0006355
Dod06g0906 389 MobiDBLite consensus disorder prediction 42 69 - -
Dod06g0906 389 SMART rav1_2 152 215 IPR001471 GO:0003700|GO:0006355
Dod06g0906 389 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700|GO:0006355
Dod06g0906 389 MobiDBLite consensus disorder prediction 42 87 - -
Dod06g0906 389 MobiDBLite consensus disorder prediction 370 389 - -
Dod06g0906 389 Gene3D AP2/ERF domain 151 211 IPR036955 GO:0003700|GO:0006355
Dod06g0906 389 Pfam AP2 domain 152 201 IPR001471 GO:0003700|GO:0006355
Dod06g0906 389 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
Dod06g0906 389 MobiDBLite consensus disorder prediction 109 141 - -
Dod06g0906 389 MobiDBLite consensus disorder prediction 345 389 - -
Dod06g0906 389 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Dod06g0906 389 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700|GO:0006355
Dod06g0906 389 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 1 349 - -
Dod06g0906 389 PANTHER DNA-BINDING DOMAIN 1 349 IPR044808 GO:0003700|GO:0009873
Dod06g0906 389 MobiDBLite consensus disorder prediction 104 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0906 Dod-Chr6 11518316 11520841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0906 83 213 AP2-EREBP Transcription Factor Family AT5G61890 50.382 2.03e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod06g0906 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0906 - - lja:Lj5g3v1937400.1 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0906 06 11518316 11520841 Dod06g0906 06 11518316 11520841 ECH
Dod02g2890 02 61106273 61110457 Dod06g0906 06 11518316 11520841 PCT