Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0902 ATGTCTCACAGGAAGTTCGAGCACCCCAGGCACGGTTCTCTGGGATTCCTCCCAAGGAAGCGTGCTGCCCGTCACAGAGGAAAAGTGAAGTCATTCCCCAAGGATGACCCATCCAAGCCACCCAAGCTTACTGCCTTCTTGGGTTACAAGGCTGGTATGACTCACATTGTCAGAGATGTCGAGAAACCAGGATCAAAGCTTCACAAGAAGGAGGCTTGTGAACCTGTCACAATTATCGAGACCCCTCCAATGGTTATTGTTGGGGTGGTGGGTTATGTGAAAACTCCCCGTGGCCTTCGAACTTTGAACACTGTCTGGGCTCAGCATTTGAGTGAGGAGGTTAAGCGTAGGTTCTACAAAAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAGTACTCAAAGCAGTATGAATCTGAGGAAGGAAAGAAAAACATTGAGCAACAGCTTGAGAAATTAAAGAAGTATGCCACTGTTATCCGCGTTTTGGCTCACACTCAGATCCGAAAGATGAAGGGGTTGAAGCAAAAGAAAGCCCATATCATGGAGATTCAGGTAAATGGGGGCACTATTGCTCAGAAGGTGGACTTTGCATATGGTTTCTTTGAGAAGCAGGTTCCTATTGATGCTGTCTTCCAGAAGGATGAGATGATTGACATCATTGGTGTGACAAAAGGTAAGGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTTACACGCCTTCCCCGAAAGACTCACAGGGGTCTGAGGAAGGTTGCATGTATTGGTGCCTGGCACCCTGCCAGAGTTTCCTTCACTGTTGCTAGGGCTGGTCAGAATGGATACCACCACCGAACTGAGTTGAACAAGAAGATCTACAGGCTTGGCAAGGCTGGAACTGAGTCCCACTCTGGTCTTACCGAGTTCGATAGGACTGAGAAAGACATTACCCCAATGGGTGGCTTCCCACACTATGGTTTTGTGAAGGATGATTATCTCATGGTGAAGGGTTGCACTGTTGGTCCAAAGAAAAGGGTTCTTACATTGCGCCAATCCCTGCTTAAGCAGACCTCACGTGTTGCACTTGAGGAGATCAAACTCAAGTTCATTGACACCTCTTCAAAGTTTGGACACGGTCGCTTCCAGACAACACAGGAGAAGCAAAAGTACTATGGACGCCTCAAGGCATAA 1170 0.4769 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKPPKLTAFLGYKAGMTHIVRDVEKPGSKLHKKEACEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKQYESEEGKKNIEQQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYRLGKAGTESHSGLTEFDRTEKDITPMGGFPHYGFVKDDYLMVKGCTVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKYYGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0902 389 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 389 - -
Dod06g0902 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Dod06g0902 389 MobiDBLite consensus disorder prediction 1 41 - -
Dod06g0902 389 Gene3D Translation factors 44 385 - -
Dod06g0902 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Dod06g0902 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Dod06g0902 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Dod06g0902 389 Gene3D - 83 207 - -
Dod06g0902 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0902 Dod-Chr6 11486255 11489542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0902 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.563 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0902 K02925 - gmx:100819132 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0902 06 11486255 11489542 Dod06g0902 06 11486255 11489542 ECH