Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0890 ATGTCCTTCCGTAGTATAGTTCGTGATGTAAGGGATGGGATTGGAAGCTTGTCGAGGCGGAGTTTTGACTTAAGGTTTACTGGCCACCACGGGGGAAAGTCACGTAGTCTGGTCCATGAATTGCAGGATCAGCCTCTGGTTATACAGAGCAGCCGATGGGCTAGCCTTCCGCCGGAGCTTCTTCGCGATGTTATTAGGAGATTGGAAGCAAGCGAGAGTACCTGGCCTGGTCGTAAGAACGTGGTTGCATGTGCAGCTGTGTGCAAAGCATGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCGATTTCCCTGAAGCAGCCTGGGTATAGGGATGGACTTATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCGTCTCTTCCTTTGCCTTAGTCCTGGCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCGCTGCGAAACGGACTAGAAGGACGACTTGCACGGAGTATATTATATCAATGGATGCAGATAGCATGTCAAGATCTAGTAGCACTTACATTGGAAAATTGAGGTCAAATTTTCTTGGCACCAAATTCATCATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGTCTCCACCAGGCCGAAGCCGCAGGTTTTATTCGAAAAAAGTTTCTCCAAAGGTCCCTACCGGCAGCTACAATATTGCCCAGGTCAACTATGAATTGAATGTCCTTGGTACTAGGGGCCCAAGGAGGATGCACTGCACCATGTACTCAATCCCTGCATCATCCCTTGAGCCTGGTGGCAGTGTCCCAGGCCAGCCGGACCTCCTTCCCCCGTCCCTCGAGGATTCTTTCCGGAGTATATCCTTCTCAAAGTCGATTGGCCATTCGACAGAGTTTAGCAGCTCCAGGTTCTCAGACATAATGGGAGCCGCATTGAGGAGGAGGAAGAAGGAAAGTTGA 972 0.4846 MSFRSIVRDVRDGIGSLSRRSFDLRFTGHHGGKSRSLVHELQDQPLVIQSSRWASLPPELLRDVIRRLEASESTWPGRKNVVACAAVCKAWREMCKEIVSSPEFCGKITFPISLKQPGYRDGLIQCFIKRDKSKLTYRLFLCLSPGLLVENGKFLLAAKRTRRTTCTEYIISMDADSMSRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVNYELNVLGTRGPRRMHCTMYSIPASSLEPGGSVPGQPDLLPPSLEDSFRSISFSKSIGHSTEFSSSRFSDIMGAALRRRKKES* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0890 323 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Dod06g0890 323 SUPERFAMILY Tubby C-terminal domain-like 102 285 IPR025659 -
Dod06g0890 323 Gene3D Tubby Protein; Chain A 113 304 IPR025659 -
Dod06g0890 323 PANTHER TUBBY-RELATED 1 318 - -
Dod06g0890 323 Pfam F-box domain 53 100 IPR001810 GO:0005515
Dod06g0890 323 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 1 318 - -
Dod06g0890 323 Gene3D - 48 101 - -
Dod06g0890 323 Pfam Tub family 114 295 IPR000007 -
Dod06g0890 323 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Dod06g0890 323 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Dod06g0890 323 PRINTS Tubby superfamily signature 234 261 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0890 Dod-Chr6 11350103 11353909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0890 1 313 TUB Transcription Factor Family AT1G76900 67.879 1.26e-155 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dod06g0890 Tub 7.1e-60 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0890 K19600 - qsu:111992792 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0890 06 11350103 11353909 Dod06g0890 06 11350103 11353909 ECH
Dod02g2915 02 61512651 61517011 Dod06g0890 06 11350103 11353909 PCT