Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0888 ATGCTTGGGGACACAGCAGTATTAGGAGGAGGAGGAAGTAGTGGTGGTGGTGGTGGTGATGAAAGTGGGTCAGGAGATGCAGTGGCGGCGATTGCATCAAGTGGTGGTGGCGGTGGTAGTCACGAAGGTGCGGCGACGGCGACGGCGGTGACTACGGGTGGTGGTGGATCAAATTCAGGGGATGAAGAGAGAGGGAGAATATTGGAAGAAGGAGAGCGCAGTGGCAGCTTCGGTGGGAACCGGTGGCCACGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCAGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCCTTGTGGGATGAAGTCTCCAGGAAGATGGCAGAGCTTGGGTATCATAGAAGTGCCAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACAAAAGAAGGTCGAAGTGGCAAAGCGGATGGCAAAACATACCGGTTCTTTGATCAATTGGAAGCCCTTGAGAACCACCCTCCAACAACTCATCAATCCCCAAAACCACCACCACCACAACAACAACATTCTTCACTACCTCCAACACCACCACCACAAATAGTAACAACTTCAGCAGTGCCACTACCAACTACTACTACAACAACACCAACAACAACAACAATGGCAATGCCACCATCAGTGCCTAATACCACACTCAGTGTACCACCACCACATGTCACTGTTCCATCAAAAACAACAACAACAACCACACTCCCTATGGCCATGCCTCAAGGCATTGTAACTGCCCCATCAATAAACCTCCCAATCCCATCCTACCCTCCACCTCCAACAAAAACAATAAACCCTACAAACCTATTCCCACATTCAACACCAAACCCTACAACTACTACCAATCCTCTTCCTCACACCACAATCCCAGTTTCCTTCCCCAACATCCCAACCGATCTCTTGTCCAACTCAAGTTCTTTTTCAACCTCTTCCGATGAAACACTCGAAGGGAGGCGCAAGAGGAAGCGCAAGTGGAAGGACTTCTTCGAGAGGCTAATGAAGGAGGTGGTCGAGAAGCAGGAGCAGCTGCAGAAGAGGTTCTTGGAAGCCATAGAGAAGCGAGAGCACGACCGAATGGCAAGGGAAGAAGCATGGAGAGTGCAAGAGATGCAAAGGATCAATAGAGAGAGGGACATGTTGGCACAAGAAAGGTCCATAGCTGCGGCAAAAGATGCTGCAGTAATGTCATTATTGCAGAAGATAGGCGAACAGCAAAATCTAGGACAAGCATTGAATACCATCAACATTGTCCAGCCACAACCACAATCACAACAGCAACCACAACCGCAATCGCACCCGCAGCAGCAATCACAACCAAGTTCACAGCCAAGTGCACCACAGGCTCCACTGCCGGGGCAGCAACTTGTCGTACCGATTGTTCAGCCTGCGGTACTACCGGTGGCGCTAGCCCCGCCCCAACCCCCACAACCGCAACCACAACCACAGCAGCAACAACGATCACAAGTGACGAGTATGGAAATCGTGACAGTTGATAATAACAACGGTGAGAATTTGATGCCTGCAAGCTCATCGAGGTGGCCGAAAGTGGAGGTTCAGGCATTGATAAAGCTGAGGACGAGCCTTGACGCAAAGTATCAAGAGAACGGGCCAAAGGGGCCATTATGGGAGGAGATCTCGTCATCAATGAGGAAGCTCGGGTACAACAGGAACGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAAAGCAACAAGAAGAGGCCAGAAGATTCCAAGACTTGCCCCTACTTTCACCAGCTCGATGCCCTCTACAGGGAGAAGAACAAGCTCGACAGCAGCCACGTGGCTGCGGCGGTGGTGACGGCAGCAAAGCCCGAGAGCATGGTGGCGCCGCTCATGGTGCGGCCGGAGCAACAGTGGCCCCCTCAGCCGGGGCCGGAGGTGGCCATGGAAGACGTGGAGAATGACCCCATGGACAGACACCATCATGATGAGGAAGACGAAGATGACGAAGACGAGGACAAGGACACTGGAGATGAAGAAGATGAAGAGGACGAAGGGGGCGGTGGCGGTGGCGGTGGCGGTGGTAATAACTATGAGATAGTGTCAAGCAAGCCTGCATCAGCTTCAATGGGTACTGCAACAGCTGAGTAG 2178 0.5174 MLGDTAVLGGGGSSGGGGGDESGSGDAVAAIASSGGGGGSHEGAATATAVTTGGGGSNSGDEERGRILEEGERSGSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWDEVSRKMAELGYHRSAKKCKEKFENVYKYHKRTKEGRSGKADGKTYRFFDQLEALENHPPTTHQSPKPPPPQQQHSSLPPTPPPQIVTTSAVPLPTTTTTTPTTTTMAMPPSVPNTTLSVPPPHVTVPSKTTTTTTLPMAMPQGIVTAPSINLPIPSYPPPPTKTINPTNLFPHSTPNPTTTTNPLPHTTIPVSFPNIPTDLLSNSSSFSTSSDETLEGRRKRKRKWKDFFERLMKEVVEKQEQLQKRFLEAIEKREHDRMAREEAWRVQEMQRINRERDMLAQERSIAAAKDAAVMSLLQKIGEQQNLGQALNTINIVQPQPQSQQQPQPQSHPQQQSQPSSQPSAPQAPLPGQQLVVPIVQPAVLPVALAPPQPPQPQPQPQQQQRSQVTSMEIVTVDNNNGENLMPASSSRWPKVEVQALIKLRTSLDAKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKLDSSHVAAAVVTAAKPESMVAPLMVRPEQQWPPQPGPEVAMEDVENDPMDRHHHDEEDEDDEDEDKDTGDEEDEEDEGGGGGGGGGGNNYEIVSSKPASASMGTATAE* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0888 725 CDD GT1 80 145 - -
Dod06g0888 725 MobiDBLite consensus disorder prediction 433 463 - -
Dod06g0888 725 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 34 713 - -
Dod06g0888 725 PANTHER - 34 713 - -
Dod06g0888 725 ProSiteProfiles Myb-like domain profile. 524 582 IPR001005 -
Dod06g0888 725 MobiDBLite consensus disorder prediction 173 200 - -
Dod06g0888 725 MobiDBLite consensus disorder prediction 1 82 - -
Dod06g0888 725 SMART sant 78 140 IPR001005 -
Dod06g0888 725 SMART sant 522 584 IPR001005 -
Dod06g0888 725 MobiDBLite consensus disorder prediction 433 462 - -
Dod06g0888 725 MobiDBLite consensus disorder prediction 314 334 - -
Dod06g0888 725 MobiDBLite consensus disorder prediction 709 725 - -
Dod06g0888 725 CDD GT1 524 589 - -
Dod06g0888 725 MobiDBLite consensus disorder prediction 168 247 - -
Dod06g0888 725 MobiDBLite consensus disorder prediction 481 503 - -
Dod06g0888 725 Coils Coil 339 366 - -
Dod06g0888 725 ProSiteProfiles Myb-like domain profile. 80 138 IPR001005 -
Dod06g0888 725 MobiDBLite consensus disorder prediction 644 725 - -
Dod06g0888 725 Pfam Myb/SANT-like DNA-binding domain 80 166 IPR044822 -
Dod06g0888 725 Pfam Myb/SANT-like DNA-binding domain 524 611 IPR044822 -
Dod06g0888 725 MobiDBLite consensus disorder prediction 201 247 - -
Dod06g0888 725 MobiDBLite consensus disorder prediction 673 696 - -
Dod06g0888 725 Gene3D - 82 143 - -
Dod06g0888 725 Gene3D - 526 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0888 Dod-Chr6 11281723 11285861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0888 71 647 Trihelix Transcription Factor Family AT1G76890 45.363 4.93e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dod06g0888 Myb_DNA-bind_4 1.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0888 - - gmx:100804788 600.512