Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0887 ATGCAGCTTGGAGACCCAAGAGTGTTGGAGACCTCCTCCGGCGAGGCGATGGCGGGGGAAGCGGCTCCGCCGGAGGGTGGTGAGGCCATTGGGGAGGGCGGTGGCGGCGGCTGCAGTGGAGGTGATGAGGGTGACAAGATCAACTTTGGAGGAAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTATTTAGAGATTCAAGTCTCAAGGGTCCACTCTGGGAAGAAGTCTCAAGGAAACTAGCAGAACTTGGTTATCACCGAAGCGCAAAGAAGTGCAAGGAGAAATTTGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAGAGCCGAAGTGGCAAATCGGAAGGAAAAACCTACAAATACTTTGACCAATTACAAGCCCTCGAGAACCAATTCACAGTCTCATCTTACGCGCCAAAGCCACAACCTACTACTCCTAGTACCAATACTTCCACTTTGGCAACAAACATAGTGACATTATTGCCAACAAGGCCTAGTACTAGTGACACCACCACCACAACACCACCACCTATCCCTTTTGCCACCACTGTTCCATCCACAAACCCTACAGTCATTTCTCCCTCACCACCACCAACCAGTGCCACCACCACCACAATCACTTCCACAACCAACCCTAGAAACCCATCATCACAAGCCAACACCAATAACAACAATAATAATGTCTCGCACTCTTTGCCCAACATGAACCTTTTCTCTTCTGCCTCGACCTCCTCTTCCACGGCCTCTGACGAGGACTTGGAGGAGAAGTACAGGAAGAAGAGGAAGTGGAAGGAGTACTTCCGGAGGCTCACGAGGCAGGTCTTGGCAAAGCAAGAGGAGATGCAGAAGAGGTTCTTGGAAGCCATAGACAAAAGGGAAAGGGAACAAGTGGCACAACAAGATGCTTGGAGGATGCAAGAGATGGCAAGGATCAATAGAGAGCATGAGATTCTTGTCCAAGAGAGATCAACAGCGGCAGCAAAAGACGCATCAGTTATTGCATTCCTTCAGAAGCTATCAGGTCAACAAAGCCCCATAACAACACAGGTTTCAACATTAATACCATTTGGTGGCAATTTCGTCCAACAACTACCACCACCACCGCAAACACAACAACATCAGCAACCATTGCAACCACCACCACAACAACCTGTGTCACAAGTACAACCACAACAGCAGCAGCAGCAACTGCAGCCACAGGCGCCATTGATGCCAAACAACAACAACCACCTTGAAGTCCAGAAAGTGAATAACGGTCACAGTGGTGCTCCATTGATGAGCCCTTCAAGGTGGCCAAAGGCTGAAGTTCATGCTTTGATAAGGCTTAGGACGAGTCTTGAAGCTAAGTATCAGGAGAATGGACCAAAAGCTCCTTTGTGGGAAGATATATCAGCTGGGATGCAGAGGCTAGGATACAATAGGAGTGCCAAGAGATGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTCAGGGAGAGCAAGAAGCAAAGGCGCGAGGATAGCAAAACATGTCCCTATTTTCAGGAGCTTGATGCTCTATACAAAGAAAAGAGCAAAAACCAGCACCCCTTTGGGTCCTCATTTCAACACATGAAGCCGAATGAGATGATGGAGCCATTGATGGTGCAACCGGAGCAGCAATGGAGGCCTCCCCCTCAGTACGAACAGCATGAGCAGCAAATGGAAGAAGGTTATCATGAGGTGAAGAACAATAACAATAATAATGGTGGTAACAACAATGCATGTCAATATGAAGCAAAAGAAAGAGAAACACAAAGAGATGATGATGAAGGAGATGATGAAGAAGAAGTAGATGATAACGGTGATGCTGATGGAGAAGATGGAGATAGTGTGGAGGATGAAGGAGGTAATTGCCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1965 0.4758 MQLGDPRVLETSSGEAMAGEAAPPEGGEAIGEGGGGGCSGGDEGDKINFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKESRSGKSEGKTYKYFDQLQALENQFTVSSYAPKPQPTTPSTNTSTLATNIVTLLPTRPSTSDTTTTTPPPIPFATTVPSTNPTVISPSPPPTSATTTTITSTTNPRNPSSQANTNNNNNNVSHSLPNMNLFSSASTSSSTASDEDLEEKYRKKRKWKEYFRRLTRQVLAKQEEMQKRFLEAIDKREREQVAQQDAWRMQEMARINREHEILVQERSTAAAKDASVIAFLQKLSGQQSPITTQVSTLIPFGGNFVQQLPPPPQTQQHQQPLQPPPQQPVSQVQPQQQQQQLQPQAPLMPNNNNHLEVQKVNNGHSGAPLMSPSRWPKAEVHALIRLRTSLEAKYQENGPKAPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVRESKKQRREDSKTCPYFQELDALYKEKSKNQHPFGSSFQHMKPNEMMEPLMVQPEQQWRPPPQYEQHEQQMEEGYHEVKNNNNNNGGNNNACQYEAKERETQRDDDEGDDEEEVDDNGDADGEDGDSVEDEGGNCRYEIATNKLSSVDTVE* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0887 654 MobiDBLite consensus disorder prediction 170 187 - -
Dod06g0887 654 CDD GT1 52 117 - -
Dod06g0887 654 MobiDBLite consensus disorder prediction 1 52 - -
Dod06g0887 654 MobiDBLite consensus disorder prediction 368 422 - -
Dod06g0887 654 MobiDBLite consensus disorder prediction 397 422 - -
Dod06g0887 654 ProSiteProfiles Myb-like domain profile. 433 497 IPR001005 -
Dod06g0887 654 CDD GT1 439 504 - -
Dod06g0887 654 MobiDBLite consensus disorder prediction 558 654 - -
Dod06g0887 654 MobiDBLite consensus disorder prediction 207 258 - -
Dod06g0887 654 MobiDBLite consensus disorder prediction 379 396 - -
Dod06g0887 654 ProSiteProfiles Myb-like domain profile. 46 110 IPR001005 -
Dod06g0887 654 PANTHER - 38 642 - -
Dod06g0887 654 MobiDBLite consensus disorder prediction 170 267 - -
Dod06g0887 654 Pfam Myb/SANT-like DNA-binding domain 439 526 IPR044822 -
Dod06g0887 654 Pfam Myb/SANT-like DNA-binding domain 52 138 IPR044822 -
Dod06g0887 654 Gene3D - 441 502 - -
Dod06g0887 654 Gene3D - 54 115 - -
Dod06g0887 654 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 38 642 - -
Dod06g0887 654 MobiDBLite consensus disorder prediction 607 631 - -
Dod06g0887 654 Coils Coil 567 587 - -
Dod06g0887 654 MobiDBLite consensus disorder prediction 579 598 - -
Dod06g0887 654 SMART sant 437 499 IPR001005 -
Dod06g0887 654 SMART sant 50 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0887 Dod-Chr6 11238585 11242541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0887 31 560 Trihelix Transcription Factor Family AT1G76890 46.082 1.04e-141 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dod06g0887 Myb_DNA-bind_4 4.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0887 - - gsj:114370603 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0887 06 11238585 11242541 Dod06g0887 06 11238585 11242541 ECH
Dod02g2918 02 61615025 61618622 Dod06g0887 06 11238585 11242541 PCT