Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0870 ATGGCAGATCTTGCTAGCTACGTGAATGTCGACCGTGACATCCACCAGGCATTAGTTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTCTGTCCATTTAGACTGTCCAGTGATGAATCATCTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTCTGAAGCTATCTTGTGTCTCGAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTCATCTGCGTCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTATAACAACGGAAAGCGATCCCTTGATTTGATTTGCAAGGATAGAGCTGAGGCAGAAGTTTGGATAGCTGGTCTCAAAGCCCTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGAGTGATGGGGGCCTATATCTTGATGATAGTAGAGATCTGACATCAAGTAGTCCAAGTGGAAGTTCAGCAAGTGCTTCACTAGACATCAGTTCTCCTGAGGTTTCTGTGAGTCTGCCTAATACTTCTCCAAAGTCCTTTCAGCCAGAGAATACCTTAAATTTTGAAAGGTCACATGCGCCATCAAATATGCTAGTGAAAGGATCTGGTTCAGATGTTTTTCGTGTTAGTGTTTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCAGATGATTATGATGCTCTGGGGGATGTGTACATATGGGGGGAGGTTATCTATGAGAACAATGTGAGAGTTGGTGCAGATAAAAGTGTCAGTTATTTCAGCCCAAGGACAGATGTTCTCCTCCCCAGGTCACTGGAGTCCAATGTGGTTTTAGATGTACTTCAAATTGCATGTGGTGTTAAACATGCTGCTCTGGTCACTAGGCAAGGTGAAATTTTTACTTGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTACAACCTCGTCTAGTCGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAATTCCATACGTGTGCTGTGACAGTGGCTGGGGAACTACATACTTGGGGTGATGGTACTCATAATGCTGGCCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTAGAGGGACTTCAAGTTGCCTTTGTAACTTGTGGTCCATGGCATACAGCCTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCCTCGGCCATGGAGGTAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTAGCAGGATTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTCGTAGAGGTTATTGTTACACAATCCAGTGCAAGTGTATCATCCGGCAAATTGTTTACTTGGGGTGATGGAGATAAGAATCGCCTTGGACATGGAGACAAGGAGGCCCGGCTGGAACCGACTTGTGTATCTTCACTTATTGATTACAATTTTTATAAAATTGCTTGTGGGCACAGTTTGACAGTAGGACTGACAACATCTGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCTCAAACTGATGGAAAGCTGCCTTGCTTGGTTGAAGACAAGCTTGCTGGAGAAGCTGTCGAAGAAATTGCATGCGGGGCATATCATGTAGCAGTGTTAACAACCAAAAATGAGGTTTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATAGAAAAACACCAACTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCAGCTGCCATTTGCCTTCATAAATGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGGAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCATTCTTGCAGTTCAAGGAAAGCATTAAGAGCAGCCTTGGCTCCTAATCCTGCAAAGCCATACCGTGTTTGTGATTCTTGTTATGCGAAATTGAACAAGGTTGCAGAAGCTGGCAATAATAATCGGAGAAATGCCTTGCCTCGTTTGTCGGGTGAAAACAAGGACAGGTTAGATAAGTCTGAGGTAAGATTGTTCAAGTCAGCTGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTTTCTCTGGTTCGAACCTCACAAACACCTTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCTACAGCTATTGATCTGAAACGAACGGCCCCAAGACCCGTTCTAACACCATCTGGGGTAAGTTCCAGGTCAGTGTCTCCTTTCTCTAGAAGACCGAGCCCTCCTCGATCAGCTACTCCAATTCCAACAACATCAGGGCTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAGCTTTTGAATCAAGAGGTGCTGAAGTTACGTGCTCAGGTTGAGTCCCTGAGACAGAGGTGTGAACTACAAGAATTAGAGCTTCAAATGTCAGCAAAAAAGACTCAGGAAGCTGTGGCACTGGCTGCTGAGGAATCTGCCAAATCTAGAGCTGCAAAAGAAGTTATAAAGTCTCTTACAGCACAGCTCAAAGATTTGGCTGAGAGACTTCCTCCTGGTGTTTATGATGCTGAGAACATTAGACCAGCTTACCTGTCAAATGGTTTGGAGTCAAATGGCATCCATTATCCAGACTCAAATGGGGAGCGTCACCACAGGGTAGAGTCAATCAGTGGCTCTAGTTTGGTTTCCATAGGATTCGAGTCTCCTCTGATGAATAGAACTGATGGGAATTTACCAGGAAGCTATGGATCTAATCTTTACCAGCAAACCCAGGGGCTTGTAACCTCTAATGGGACAGATGACTACCCGGATGTTAAATTGCCAAATGGCAGTGGCACGATTCGTGCAAGTAGCAGTAGCATGTCAGATACTGTCGATGGCAGGGATTCTGGGAATTTTCAAGATGATGAGGGTGGTTCGAGATTGAGGAATGCTGTATTGGCTACAAACAGTAATCAGATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTTGTTGCCCTGCGTGATGGAACAAGAGATTTAAAGCGAGTGCGCTTCAGCCGAAGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGAGACAGGGTATACGAAAAGTACAATGTTCGCAGCGCAGACAAGTCTTCAAGCGAAGCAGCGCGAAGGACAGAGAGTGCTGGTTCACCTGTTACATAA 3351 0.4452 MADLASYVNVDRDIHQALVALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSSGERSLKLSCVSRIIPGQRTAVFQRHLRPEKDYLSFSLIYNNGKRSLDLICKDRAEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDSRDLTSSSPSGSSASASLDISSPEVSVSLPNTSPKSFQPENTLNFERSHAPSNMLVKGSGSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVIYENNVRVGADKSVSYFSPRTDVLLPRSLESNVVLDVLQIACGVKHAALVTRQGEIFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTVAGELHTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGGRENVSYPREVESLAGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVSSLIDYNFYKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQTDGKLPCLVEDKLAGEAVEEIACGAYHVAVLTTKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPAKPYRVCDSCYAKLNKVAEAGNNNRRNALPRLSGENKDRLDKSEVRLFKSAVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQTPSLLQLKDVVLSTAIDLKRTAPRPVLTPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRAQVESLRQRCELQELELQMSAKKTQEAVALAAEESAKSRAAKEVIKSLTAQLKDLAERLPPGVYDAENIRPAYLSNGLESNGIHYPDSNGERHHRVESISGSSLVSIGFESPLMNRTDGNLPGSYGSNLYQQTQGLVTSNGTDDYPDVKLPNGSGTIRASSSSMSDTVDGRDSGNFQDDEGGSRLRNAVLATNSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYEKYNVRSADKSSSEAARRTESAGSPVT* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0870 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1099 - -
Dod06g0870 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1099 - -
Dod06g0870 1116 Gene3D - 13 129 IPR011993 -
Dod06g0870 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 697 IPR013083 -
Dod06g0870 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Dod06g0870 1116 SMART fyve_4 619 688 IPR000306 GO:0046872
Dod06g0870 1116 MobiDBLite consensus disorder prediction 975 1021 - -
Dod06g0870 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Dod06g0870 1116 ProSiteProfiles BRX domain profile. 1038 1093 IPR013591 -
Dod06g0870 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Dod06g0870 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 233 294 IPR000408 -
Dod06g0870 1116 Pfam Transcription factor BRX N-terminal domain 872 907 IPR027988 -
Dod06g0870 1116 CDD PH_PLC_plant-like 12 124 - -
Dod06g0870 1116 Coils Coil 821 855 - -
Dod06g0870 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Dod06g0870 1116 SUPERFAMILY RCC1/BLIP-II 232 622 IPR009091 -
Dod06g0870 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Dod06g0870 1116 Coils Coil 877 897 - -
Dod06g0870 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Dod06g0870 1116 MobiDBLite consensus disorder prediction 782 799 - -
Dod06g0870 1116 Gene3D - 187 357 IPR009091 -
Dod06g0870 1116 Gene3D - 358 453 IPR009091 -
Dod06g0870 1116 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Dod06g0870 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 281 291 IPR000408 -
Dod06g0870 1116 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Dod06g0870 1116 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Dod06g0870 1116 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Dod06g0870 1116 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Dod06g0870 1116 PRINTS Chromosome condensation regulator RCC1 signature 278 291 IPR000408 -
Dod06g0870 1116 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Dod06g0870 1116 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Dod06g0870 1116 MobiDBLite consensus disorder prediction 779 812 - -
Dod06g0870 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Dod06g0870 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Dod06g0870 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 516 565 IPR000408 -
Dod06g0870 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Dod06g0870 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 347 398 IPR000408 -
Dod06g0870 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 464 511 IPR000408 -
Dod06g0870 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Dod06g0870 1116 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Dod06g0870 1116 MobiDBLite consensus disorder prediction 993 1010 - -
Dod06g0870 1116 SUPERFAMILY PH domain-like 13 123 - -
Dod06g0870 1116 SUPERFAMILY FYVE/PHD zinc finger 621 692 IPR011011 -
Dod06g0870 1116 MobiDBLite consensus disorder prediction 1094 1116 - -
Dod06g0870 1116 Pfam Transcription factor regulating root and shoot growth via Pin3 1037 1092 IPR013591 -
Dod06g0870 1116 Pfam FYVE zinc finger 621 687 IPR000306 GO:0046872
Dod06g0870 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Dod06g0870 1116 Gene3D - 454 626 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0870 Dod-Chr6 10952891 10961456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0870 881 1109 Major Intrinsic Protein MIP AT1G31880 29.694 8.36e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0870 - - gmx:100783270 1894.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2935 02 61907966 61915662 Dod06g0870 06 10952891 10961456 PCT