Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0844 ATGGCTTCGGATCTGGAAAAGAAGGCCAAAGAGGCATTCCTTGACGAAGACTATGATCTCGCTGTGAAGCTTCTCACTCAGGTCATTGCCCTTAACCCCAACAACGCTGAAATCTACGCTGACCGCGCGCAGGCCAACATCAAACTCAAAAACTTCACTGAGGCCGTTGCTGATGCAAGCAAGGCAATTGAGTTGAATCCTTCTCTCCCAAAAGCATATTTGCGGAAAGGTGCTGCATGCATGAAGCTTGAGGAGTATCAGACTGCTAAGACAGCTCTAGAGATGGGTGCTTCATTGGCTCCAGAAGACCAAACATTCACTGATTTGATCAAAAAATGTGAAAAGCTCATTGCTGAAGAATCTGGTGTCTTGCCCACACCAGAAACGATCACAACACAGGGTGTTTCTGCAAAAGATGTTCAGCCAGAGAATGATGTTCCAGAGCCACCAGTGACAGTTGCTAAACCTAAATACAGGCATGAATACTACCAAAAACCTGATGAGGTGGTGGTTACCATTTTTGCAAAGGGCATTCCACGGGACAGCATTACTGTTGACTTTGGTGAACAAATACTAAGTGTTGAAATTAATGTCCATGGTGAGGATGCATATGCTTTTCAAACTCGCTTATTTGGAAAGATCATACCTGCCAGATGCCGGTATGATGTTTTGTCCACCAAAATTGAAATTCATCTAGCAAAAGCAGAACCCATCCAGTGGACATCTCTAGAATTCTGCGGAGGTATCATTGTTCCACAGAAGGCCAATGTTTCATCAGTTACTAGCAGCCAAAGACCTACTTACCCATCCTCAAAACCAACAAGAGTAGATTGGGATAAGCTCGAAGCTCAAGTTAAGAAAGAGGAAAAAGAAGAAAAGCTTGATGGTGATGCTGCATTGAACAAATTTTTCCGCGAGATATATCGAGATGCAGATGAGGACACCAGAAGAGCGATGAGCAAATCATTTGTGGAGTCTAATGGAACAGTGCTGTCTACAAACTGGAAAGAAGTGGGACAAAAGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAGTTGAGGAGATGGGAATATTAG 1077 0.4401 MASDLEKKAKEAFLDEDYDLAVKLLTQVIALNPNNAEIYADRAQANIKLKNFTEAVADASKAIELNPSLPKAYLRKGAACMKLEEYQTAKTALEMGASLAPEDQTFTDLIKKCEKLIAEESGVLPTPETITTQGVSAKDVQPENDVPEPPVTVAKPKYRHEYYQKPDEVVVTIFAKGIPRDSITVDFGEQILSVEINVHGEDAYAFQTRLFGKIIPARCRYDVLSTKIEIHLAKAEPIQWTSLEFCGGIIVPQKANVSSVTSSQRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYRDADEDTRRAMSKSFVESNGTVLSTNWKEVGQKKVEGSPPDGMELRRWEY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0844 358 Gene3D Tetratricopeptide repeat domain 1 123 IPR011990 GO:0005515
Dod06g0844 358 ProSiteProfiles CS domain profile. 155 244 IPR007052 -
Dod06g0844 358 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Dod06g0844 358 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
Dod06g0844 358 Pfam CS domain 159 234 IPR007052 -
Dod06g0844 358 Pfam SGS domain 277 356 IPR007699 -
Dod06g0844 358 ProSiteProfiles SGS domain profile. 267 358 IPR007699 -
Dod06g0844 358 Gene3D - 156 245 IPR008978 -
Dod06g0844 358 PANTHER PHOSPHATASE-RELATED 1 358 - -
Dod06g0844 358 CDD p23_CS_SGT1_like 161 244 - -
Dod06g0844 358 SUPERFAMILY HSP20-like chaperones 148 252 IPR008978 -
Dod06g0844 358 Pfam Tetratricopeptide repeat 14 57 - -
Dod06g0844 358 SUPERFAMILY TPR-like 5 113 IPR011990 GO:0005515
Dod06g0844 358 SMART tpr_5 2 35 IPR019734 GO:0005515
Dod06g0844 358 SMART tpr_5 70 103 IPR019734 GO:0005515
Dod06g0844 358 SMART tpr_5 36 69 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0844 Dod-Chr6 10495923 10499473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0844 1 101 U-box Gene Family AT3G07370 29.524 8.49e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0844 K12795 - gmx:100780174 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2970 02 63270007 63275479 Dod06g0844 06 10495923 10499473 ECH
Dod06g0844 06 10495923 10499473 Dod06g0844 06 10495923 10499473 ECH