Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0836 ATGGTATCCAAAAACCCGAACCCATCTTCAGAGGGGTTCTACTTGGATCCCAGTGCGCTGCCTAGCATCGTTCCCTTCTCCTCCGCTGCCGCTGCCACGACGGCCACCTCGGCGGAGGACGCCGCCAAGAAGACGCGGAAGCCATACACTATAACCAAGTCTAGGGAGAGCTGGACTGAGCCCGAACACGACAAGTTCCTCGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTCATTCAGATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGCGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCCGCTCATCCATATCCTCAGAAAGCTTCCAAAAATGCCCCCATACCTTCACAAGTATCAGGATCATTGCAGTCTTCATCTTCTTTGCTTGAACCTGGATATATCTTACAGCATGATTCTTCAGCAATGCTTAAAGCTCCTATTGTTAACACTGCAGTGTCTTCCTGGTCAAACAACACCTTGCAGCAAACAGCCAATGTATTGCATGGGCAAAAAGTGAATAATTGTTGCAGTAGCAGTGAAAGCACTCCTAGAACACGACCAGTTGGTGAATCTAATGTTCAAGGGAATAATAGCCATCCATTGAGAGTTCTTCCAGATTTTACTCAAGTATACAGCTTCATTGGCAGTGTATTTGATCCAAATGTAACTGGACATTTGCAGAAACTAAAAAGGATGGACCCTATAGATGTTGAGACGGTGCTACTATTGATGAGAAATCTGTCTATCAATTTAACAAGTCCAGATTTTGAGGATCATAGAAGGCTGCTAGCCTCCTATGAGGTGGAACCCGAGACAGATTACCATGTCAATGCAGACAGACCCATCCACGATGAGCAGTTGAAGAGTGCTACCTAG 939 0.4537 MVSKNPNPSSEGFYLDPSALPSIVPFSSAAAATTATSAEDAAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPIPSQVSGSLQSSSSLLEPGYILQHDSSAMLKAPIVNTAVSSWSNNTLQQTANVLHGQKVNNCCSSSESTPRTRPVGESNVQGNNSHPLRVLPDFTQVYSFIGSVFDPNVTGHLQKLKRMDPIDVETVLLLMRNLSINLTSPDFEDHRRLLASYEVEPETDYHVNADRPIHDEQLKSAT* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0836 312 ProSiteProfiles Myb-like domain profile. 50 100 IPR001005 -
Dod06g0836 312 CDD SANT 57 100 IPR001005 -
Dod06g0836 312 MobiDBLite consensus disorder prediction 105 144 - -
Dod06g0836 312 PANTHER PROTEIN REVEILLE 6 3 305 - -
Dod06g0836 312 MobiDBLite consensus disorder prediction 196 221 - -
Dod06g0836 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 53 102 IPR006447 GO:0003677
Dod06g0836 312 PANTHER SWI/SNF COMPLEX-RELATED 3 305 - -
Dod06g0836 312 SUPERFAMILY Homeodomain-like 49 105 IPR009057 -
Dod06g0836 312 ProSiteProfiles SANT domain profile. 53 104 IPR017884 -
Dod06g0836 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 104 IPR017930 -
Dod06g0836 312 Gene3D - 58 105 - -
Dod06g0836 312 SMART sant 54 102 IPR001005 -
Dod06g0836 312 MobiDBLite consensus disorder prediction 40 58 - -
Dod06g0836 312 MobiDBLite consensus disorder prediction 34 58 - -
Dod06g0836 312 Pfam Myb-like DNA-binding domain 55 100 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0836 Dod-Chr6 10428457 10434190 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod06g0836 Myb_DNA-binding 3.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0836 - - gmx:100794389 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2986 02 63451768 63457856 Dod06g0836 06 10428457 10434190 ECH
Dod06g0836 06 10428457 10434190 Dod06g0836 06 10428457 10434190 ECH
Dod02g2986 02 63451768 63457856 Dod06g0836 06 10428457 10434190 PCT