Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0800 ATGTCAGAATCTGAGGAAGATAACACAGACTTTGGTCCAAAGTCAAAGGCACCTGGGGAGCAACAAGTTCCAGTTGGTTGTGCCATGGATTTCGATCTGGACTTGGAGAGTTCATGGCCGTTGGATCAGTTGTCCTCCTTTGTTTCCTCCAACCCCATGTCACCTTTCCTCTTCTCCAGCTCATCTGACCAACCTTCCTCTCCTCTTTGGGCCTTCTCTGATGGAGAGGATGACAGGCTCAACAGGGTTGCTGCCTCAGCTTTTACTGATTGCCACAAGATATTCTCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGTGGAGAATGATGACAACAAAAAAATTTTACCACCCCTTGTGGCTTTGCCACCATTAGAGATTTTGGATACCTATTGTATAATCAAGGAAAGGATGACACAAGCGCTTCGCTACTTCAAAGAGTTGACTGAACAGAATGTCCTGGCTCAGGTTTGGGCACCTGTGAGAAATGGTAATCGGTATGTGCTTACAACTTCGGGCCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACGGTCTCCCTGATGTACATGTTTCCTGTGGATGGGGAGAATGATGGAACTCTGGGGCTTCCTGGTAGGGTTTTTCAGCAGAAGTTACCGGAATGGACTCCTGACGTTCAGTACTATTCTAGTAAGGAGTATCCGCGCCGGGATCATGCTCAACATTACAATGTTCGCGGGACCTTGGCTTTGCCTGTGTTTGAGCCTTCATTGCAGTCATGTGTTGGTGTCCTGGAGCTGATCATGACTTCAAAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCACTTCAGGCAGTAAATTTAAAGAGTTCAGAAATTTTGGACCATCAATACACTCAGATTTGTAACGAAGGCCGCCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTGTGTGAAACTCACAATTTACCTCTAGGCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCCCATGGTGGTGGCCTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGACATAGCATTCTACATCATAGATGCTCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGTGTTGCTGGGAGGGCCTTTTTGTCCCACAGCTTGTGCTTCTGTGGGAACATTACCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTACGAAGCTCTCATACCGGAGAAGATGATTATGTATTAGAGTTTCTCCTGCCTCCTAGGATCACAGACTTCCATGAACAAAAGAATTTGCTGGGATCCATATTGGCAACAATGAAACAGCATTTCCAGAGCCTTAAGATTGCCGCTGGCATTGAACTTGAGGAGGATGTCTCCATTGAAATTATTGAAGTGACAAATGAAAGAGTTCAGCTGAGTCTTGAACCTATTCCAATTGCACAATTTACTCAATCATCGCCTAGACCTGATGCCTCACCAAATGTGGGGGAGGAAGTGCCACAGCATCCATCAGAACCGAAAATAATGATGTATTGTAATGACATAAATCATGGAGGGAGTCCTGGTGATAATGCAGGTGGAAGCCTTTATCAGATGTCCTCTTTAGAGCCTAAAAACACAAAGAAACCCCTAGAGAGGAAACGTGGGAAAACTGAGAAATCAATTAGTCTTGAAGTTCTGCAGCGTTACTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCAAAGCTCAAGCGTGTTATTGAATCCGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATCCTTTAACCACAAGTCCTCTTCCCATTCCTGTTGGTTCCTTTCCAGAGCCTTCTACTCCAAACAAGTTCAATCCACAAGCCTCATTATGCATTAGGCCATCAGAACCTCAGATGAGAGAAAATGAATTGGATGCCTCCAAAGTATCAGAAACAAGCCGACAAGATGGTATGGAAGATCAATTGCTGGGACGAAGGACACAAAGTCTTGATAAAGTGACTAATGATAAAGGTGGATCTACTCATGTGGTTGGCAAAGAACCCAGAAGGACTAGAACTGGTAGTGGCTCAAGTGCAGATAGCACAAATCCTACTTCTCATGGATCATGCCATGGTAGCCCCCCTATTGAAAGTTCACCTGTTAAAGATATATTCATTACGTCCAACAACGAGCAATGTGTAGTGCTAAGATCACCAGAATCGATGCTGCAGCCTAATAATACACTGAACTGTCCAACTGCATACAATATGCCTGACATTGTGGCAACAGAACTTCAGGAGCCATTTGGAGGAATGCTAATAGAAGATGCTGGTAGTTCCAAGGACTTAAGGAACTTGTGTCCTTCTGTAGCAGAGGCCATTTTGGAAGACCTGGCCCCAGAACCATGTGGGACTAATCCTCCATGTTCTGACTTGGCTCCTAAGCAAGGCATGGTTACCCTTAAGAACACAGTGACACCTTTTGCAGCTAGGAAAGAATTGAAGACTGTGACTATTAAGGCAACATATAGAGAAGATATAATAAGGTTCCGGGTCTCTTTGGATTGTGGCATTGTGGAGTTGAAAGAAGAAGTTGCCAAGAGGTTGAAACTAGAAGTTGGTACATTCGATATCAAGTACTTGGATGATGATCATGAATGGGTTTTGATAGCATGTGATGCAGATCTGCAGGAGTGCATAGATGTTTCAAGGTCATCATCAGGAAGTAACATAATCAGGGTTTTGGTGCATGACATAACGTTCAATCTTGGAAGCTCCTGTGAGAGCTCAGGGGAGTGA 2994 0.4415 MSESEEDNTDFGPKSKAPGEQQVPVGCAMDFDLDLESSWPLDQLSSFVSSNPMSPFLFSSSSDQPSSPLWAFSDGEDDRLNRVAASAFTDCHKIFSCDSNSIAEKPVENDDNKKILPPLVALPPLEILDTYCIIKERMTQALRYFKELTEQNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFPVDGENDGTLGLPGRVFQQKLPEWTPDVQYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLQSCVGVLELIMTSKKINYAPEVDKICKALQAVNLKSSEILDHQYTQICNEGRQNALSEILEILTVVCETHNLPLGQTWVPCRHRSVLAHGGGLKKSCSSFDGSCMGQVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSHSLCFCGNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGEDDYVLEFLLPPRITDFHEQKNLLGSILATMKQHFQSLKIAAGIELEEDVSIEIIEVTNERVQLSLEPIPIAQFTQSSPRPDASPNVGEEVPQHPSEPKIMMYCNDINHGGSPGDNAGGSLYQMSSLEPKNTKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNPLTTSPLPIPVGSFPEPSTPNKFNPQASLCIRPSEPQMRENELDASKVSETSRQDGMEDQLLGRRTQSLDKVTNDKGGSTHVVGKEPRRTRTGSGSSADSTNPTSHGSCHGSPPIESSPVKDIFITSNNEQCVVLRSPESMLQPNNTLNCPTAYNMPDIVATELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLAPEPCGTNPPCSDLAPKQGMVTLKNTVTPFAARKELKTVTIKATYREDIIRFRVSLDCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECIDVSRSSSGSNIIRVLVHDITFNLGSSCESSGE* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0800 997 SMART PB1_new 901 984 IPR000270 GO:0005515
Dod06g0800 997 PANTHER PROTEIN NLP8 3 996 IPR045012 GO:0003700
Dod06g0800 997 ProSiteProfiles PB1 domain profile. 901 984 IPR000270 GO:0005515
Dod06g0800 997 SUPERFAMILY CAD & PB1 domains 900 985 - -
Dod06g0800 997 Pfam PB1 domain 901 983 IPR000270 GO:0005515
Dod06g0800 997 ProSiteProfiles RWP-RK domain profile. 581 662 IPR003035 -
Dod06g0800 997 MobiDBLite consensus disorder prediction 690 786 - -
Dod06g0800 997 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 996 - -
Dod06g0800 997 MobiDBLite consensus disorder prediction 703 726 - -
Dod06g0800 997 CDD PB1_NLP 902 983 IPR034891 -
Dod06g0800 997 Gene3D - 898 982 - -
Dod06g0800 997 MobiDBLite consensus disorder prediction 756 778 - -
Dod06g0800 997 MobiDBLite consensus disorder prediction 1 27 - -
Dod06g0800 997 MobiDBLite consensus disorder prediction 522 542 - -
Dod06g0800 997 MobiDBLite consensus disorder prediction 562 590 - -
Dod06g0800 997 Pfam RWP-RK domain 594 642 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0800 Dod-Chr6 9809514 9814058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0800 268 997 NLP Transcription Factor Family AT4G24020 51.455 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dod06g0800 PB1 2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0800 - - gmx:100786118 1612.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3027 02 63856510 63861213 Dod06g0800 06 9809514 9814058 PCT