Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0740 ATGAGGCCTATCTTCTGTGGAAATTTTGAATATGATGCCCGTCAGTCCGAGCTGGAGCGGCTTTTTAGACGTTATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATTTATATGGAAGACGAAAGAGATGCTGAGGCTGCAATTCGTGCTCTTGACCGAGTTGAATTTGGTCGGAAGGGGCGCAGACTTCGTGTGGAATGGACTAAGCATGAACGCGGCATTAGAAGGCCTACTGGTTCAAAAAGATCTTCAGCTAATGGAAGGCCATCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTCGCTTTTGTTCAGTATGAATCAGAGGATGATGCAAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTATTGGATCGAGTTATTTCAGTTGAATTTGCTGTTAAAGATGATGATGACAAGAGAGGTGGATATAGCCCAGAGAGAGGCCGTGATCGCCAACGTGATAGAAGCCGTGATGGAAGGCGATCACTCAGTCCATATCGTAGAGAAAGGGATAGTCCTGATTATGGTCGTGGCCCCAGTCCATATAAGAGGGAAAGGAGCAGCCCTGACTATGGCCATAGCCGTAGCCGTAGTCATAGCCGAAGTCCACCTCGGAGGGAGCAAGCTAGTCCTGGTTATGAACGTAGAAGCCCTAGTCCATATAGAAGAGAGAGGGATGGTTCTGACCCTGTTCGTGGCTCTAGCCGCAGTCCTTATCACAAAGAGCGTGAAATAACTGACCATAGTCCTGATGGAATGGATAGGAGAAGCCCTCAAAATGGCCGTGGTTCTGGCCATAGTCCTGATGACACCGAGAAGGCTAGCCCTGAGAATGGCCATGGCTCTAGAGGTAGTCCTGATGAGAAAGGGAACCCTAGCCCTTACAGTGGTTATGGGGAAAGCCCAAATACTATGCCTGAGCCCAGGGACAGTCCCAACAGTCCCAACTATGGTGGTCCGGAAAGTCCCATGCATGAAAGATACCGCAGTCAGTCACCCCCTGCTGAAGAATGA 1110 0.4784 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGIRRPTGSKRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDKRGGYSPERGRDRQRDRSRDGRRSLSPYRRERDSPDYGRGPSPYKRERSSPDYGHSRSRSHSRSPPRREQASPGYERRSPSPYRRERDGSDPVRGSSRSPYHKEREITDHSPDGMDRRSPQNGRGSGHSPDDTEKASPENGHGSRGSPDEKGNPSPYSGYGESPNTMPEPRDSPNSPNYGGPESPMHERYRSQSPPAEE* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0740 369 SUPERFAMILY RNA-binding domain, RBD 4 91 IPR035979 GO:0003676
Dod06g0740 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Dod06g0740 369 SUPERFAMILY RNA-binding domain, RBD 80 172 IPR035979 GO:0003676
Dod06g0740 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Dod06g0740 369 Gene3D - 80 212 IPR012677 -
Dod06g0740 369 MobiDBLite consensus disorder prediction 168 369 - -
Dod06g0740 369 MobiDBLite consensus disorder prediction 328 350 - -
Dod06g0740 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Dod06g0740 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Dod06g0740 369 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 210 - -
Dod06g0740 369 Gene3D - 1 79 IPR012677 -
Dod06g0740 369 CDD RRM1_AtRSp31_like 2 73 - -
Dod06g0740 369 PANTHER BNAC08G47240D PROTEIN 4 210 - -
Dod06g0740 369 SMART rrm1_1 96 162 IPR000504 GO:0003723
Dod06g0740 369 SMART rrm1_1 3 70 IPR000504 GO:0003723
Dod06g0740 369 MobiDBLite consensus disorder prediction 168 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0740 Dod-Chr6 9009715 9014174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0740 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.277 2.94e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0740 K12893 - gmx:100781534 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0740 06 9009715 9014174 Dod06g0740 06 9009715 9014174 ECH